9BER image
Entry Detail
PDB ID:
9BER
EMDB ID:
Title:
Cryo-EM structure of the HIV-1 JR-FL IDL Env trimer in complex with PGT122 Fab
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2024-04-16
Release Date:
2024-07-31
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp41
Chain IDs:B, D (auth: C), F (auth: I)
Chain Length:153
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Envelope glycoprotein gp120
Chain IDs:A (auth: G), C (auth: A), E (auth: F)
Chain Length:477
Number of Molecules:3
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:PGT122 heavy chain
Chain IDs:G (auth: H), I (auth: D), K (auth: J)
Chain Length:132
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:PGT122 light chain
Chain IDs:H (auth: L), J (auth: E), L (auth: K)
Chain Length:105
Number of Molecules:3
Biological Source:Homo sapiens
Primary Citation
Design of soluble HIV-1 envelope trimers free of covalent gp120-gp41 bonds with prevalent native-like conformation.
Cell Rep 43 114518 114518 (2024)
PMID: 39028623 DOI: 10.1016/j.celrep.2024.114518

Abstact

Soluble HIV-1 envelope (Env) trimers may serve as effective vaccine immunogens. The widely utilized SOSIP trimers have been paramount for structural studies, but the disulfide bond they feature between gp120 and gp41 constrains intersubunit mobility and may alter antigenicity. Here, we report an alternative strategy to generate stabilized soluble Env trimers free of covalent gp120-gp41 bonds. Stabilization was achieved by introducing an intrasubunit disulfide bond between the inner and outer domains of gp120, defined as interdomain lock (IDL). Correctly folded IDL trimers displaying a native-like antigenic profile were produced for HIV-1 Envs of different clades. Importantly, the IDL design abrogated CD4 binding while not affecting recognition by potent neutralizing antibodies to the CD4-binding site. By cryoelectron microscopy, IDL trimers were shown to adopt a closed prefusion configuration, while single-molecule fluorescence resonance energy transfer documented a high prevalence of native-like conformation. Thus, IDL trimers may be promising candidates as vaccine immunogens.

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Primary Citation of related structures