9BE5 image
Deposition Date 2024-04-14
Release Date 2025-04-30
Last Version Date 2025-05-21
Entry Detail
PDB ID:
9BE5
Keywords:
DNA BINDING PROTEIN/DNA
Title:
Cryo-EM structure of Human Nucleosome collected by EPU on Glacios at 3.3 Angstrom resolution
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9BE5 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Gene (Uniprot):H3C15, H3C14, H3C13
Chain IDs:A
Chain Length:97
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q71DI3 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:83
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:A0A9J8D176 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1
Gene (Uniprot):H2AC11, H2AC13, H2AC15, H2AC16, H2AC17
Chain IDs:C
Chain Length:103
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P0C0S8 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B type 1-J
Gene (Uniprot):H2BC11
Chain IDs:D, H
Chain Length:95
Number of Molecules:2
Biological Source:Homo sapiens
UniProt ID:P06899 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3.2
Gene (Uniprot):H3C15, H3C14, H3C13
Chain IDs:E
Chain Length:98
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q71DI3 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A type 1-B/E
Gene (Uniprot):H2AC4, H2AC8
Chain IDs:G
Chain Length:105
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P04908 Pfam ID:PF00125, PF16211
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (145-MER)
Chain IDs:I
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (145-MER)
Chain IDs:J
Chain Length:145
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
NA
Primary Citation
Cryo-EM structure of Human Nucleosome collected by EPU on Glacios at 3.3 Angstrom resolution
To Be Published ? ? ? (?)
Primary Citation of related structures
9BE5