9BDJ image
Deposition Date 2024-04-11
Release Date 2024-09-18
Last Version Date 2024-10-16
Entry Detail
PDB ID:
9BDJ
Keywords:
Title:
MicroED structure of bovine liver catalase with missing cone eliminated by suspended drop
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Method Details:
Experimental Method:
Resolution:
4.00 Å
R-Value Free:
0.35
R-Value Work:
0.31
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Catalase
Gene (Uniprot):CAT
Chain IDs:A, B, C, D
Chain Length:527
Number of Molecules:4
Biological Source:Bos taurus
Primary Citation
Eliminating the missing cone challenge through innovative approaches.
J Struct Biol X 9 100102 100102 (2024)
PMID: 38962493 DOI: 10.1016/j.yjsbx.2024.100102

Abstact

Microcrystal electron diffraction (MicroED) has emerged as a powerful technique for unraveling molecular structures from microcrystals too small for X-ray diffraction. However, a significant hurdle arises with plate-like crystals that consistently orient themselves flat on the electron microscopy grid. If the normal of the plate correlates with the axes of the crystal lattice, the crystal orientations accessible for measurement are restricted because the crystal cannot be arbitrarily rotated. This limits the information that can be acquired, resulting in a missing cone of information. We recently introduced a novel crystallization strategy called suspended drop crystallization and proposed that crystals in a suspended drop could effectively address the challenge of preferred crystal orientation. Here we demonstrate the success of the suspended drop approach in eliminating the missing cone in two samples that crystallize as thin plates: bovine liver catalase and the SARS‑CoV‑2 main protease (Mpro). This innovative solution proves indispensable for crystals exhibiting systematic preferred orientations, unlocking new possibilities for structure determination by MicroED.

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