9BDH image
Entry Detail
PDB ID:
9BDH
Keywords:
Title:
Crystal structure of HIV-1 MPER scaffold in complex with antibody Fab Ab45.1
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-04-11
Release Date:
2025-02-19
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.29
R-Value Work:
0.26
R-Value Observed:
0.26
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GT10.2
Chain IDs:C
Chain Length:153
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab 45.1 Heavy Chain
Chain IDs:A (auth: H)
Chain Length:225
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Fab 45.1 Light Chain
Chain IDs:B (auth: L)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation

Abstact

Current prophylactic human immunodeficiency virus 1 (HIV-1) vaccine research aims to elicit broadly neutralizing antibodies (bnAbs). Membrane-proximal external region (MPER)-targeting bnAbs, such as 10E8, provide exceptionally broad neutralization, but some are autoreactive. Here, we generated humanized B cell antigen receptor knock-in mouse models to test whether a series of germline-targeting immunogens could drive MPER-specific precursors toward bnAbs. We found that recruitment of 10E8 precursors to germinal centers (GCs) required a minimum affinity for germline-targeting immunogens, but the GC residency of MPER precursors was brief due to displacement by higher-affinity endogenous B cell competitors. Higher-affinity germline-targeting immunogens extended the GC residency of MPER precursors, but robust long-term GC residency and maturation were only observed for MPER-HuGL18, an MPER precursor clonotype able to close the affinity gap with endogenous B cell competitors in the GC. Thus, germline-targeting immunogens could induce MPER-targeting antibodies, and B cell residency in the GC may be regulated by a precursor-competitor affinity gap.

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Primary Citation of related structures