9BCX image
Entry Detail
PDB ID:
9BCX
EMDB ID:
Title:
Cryo-EM structure of the S. cerevisiae ORC-Cdc6-Mcm2-7-DNA complex with a fully closed Mcm2-Mcm5 DNA entry gate
Biological Source:
PDB Version:
Deposition Date:
2024-04-10
Release Date:
2025-01-01
Method Details:
Experimental Method:
Resolution:
6.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM2
Chain IDs:A (auth: 2)
Chain Length:868
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM3
Chain IDs:B (auth: 3)
Chain Length:971
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM4
Chain IDs:D (auth: 4)
Chain Length:933
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM5
Chain IDs:C (auth: 5)
Chain Length:775
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM6
Chain IDs:E (auth: 6)
Chain Length:1017
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:DNA replication licensing factor MCM7
Chain IDs:F (auth: 7)
Chain Length:845
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:TAH11 isoform 1
Chain IDs:N (auth: 8)
Chain Length:604
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 1
Chain IDs:G (auth: B)
Chain Length:914
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 2
Chain IDs:H (auth: C)
Chain Length:620
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 3
Chain IDs:I (auth: D)
Chain Length:616
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 4
Chain IDs:J (auth: E)
Chain Length:529
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 5
Chain IDs:K (auth: F)
Chain Length:479
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 6
Chain IDs:L (auth: G)
Chain Length:435
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Cell division control protein 6
Chain IDs:M (auth: I)
Chain Length:513
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Description:DNA (39-MER)
Chain IDs:O
Chain Length:39
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Description:DNA (39-MER)
Chain IDs:P
Chain Length:39
Number of Molecules:1
Biological Source:synthetic construct
Primary Citation
MCM2-7 ring closure involves the Mcm5 C-terminus and triggers Mcm4 ATP hydrolysis.
Nat Commun 16 14 14 (2025)
PMID: 39747125 DOI: 10.1038/s41467-024-55479-1

Abstact

The eukaryotic helicase MCM2-7, is loaded by ORC, Cdc6 and Cdt1 as a double-hexamer onto replication origins. The insertion of DNA into the helicase leads to partial MCM2-7 ring closure, while ATP hydrolysis is essential for consecutive steps in pre-replicative complex (pre-RC) assembly. Currently it is unknown how MCM2-7 ring closure and ATP-hydrolysis are controlled. A cryo-EM structure of an ORC-Cdc6-Cdt1-MCM2-7 intermediate shows a remodelled, fully-closed Mcm2/Mcm5 interface. The Mcm5 C-terminus (C5) contacts Orc3 and specifically recognises this closed ring. Interestingly, we found that normal helicase loading triggers Mcm4 ATP-hydrolysis, which in turn leads to reorganisation of the MCM2-7 complex and Cdt1 release. However, defective MCM2-7 ring closure, due to mutations at the Mcm2/Mcm5 interface, leads to MCM2-7 ring splitting and complex disassembly. As such we identify Mcm4 as the key ATPase in regulating pre-RC formation. Crucially, a stable Mcm2/Mcm5 interface is essential for productive ATP-hydrolysis-dependent remodelling of the helicase.

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Primary Citation of related structures