9BCJ image
Deposition Date 2024-04-09
Release Date 2025-01-08
Last Version Date 2025-01-08
Entry Detail
PDB ID:
9BCJ
Keywords:
Title:
Crystal structure of human hemoglobin in complex with the HbpA receptor from Corynebacterium diphtheriae
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.69 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA1, HBA2
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Chain IDs:B
Chain Length:146
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Membrane protein
Gene (Uniprot):DIP2330
Chain IDs:C
Chain Length:198
Number of Molecules:1
Biological Source:Corynebacterium diphtheriae NCTC 13129
Primary Citation
Molecular basis of hemoglobin binding and heme removal in Corynebacterium diphtheriae.
Proc.Natl.Acad.Sci.USA 122 e2411833122 e2411833122 (2025)
PMID: 39739808 DOI: 10.1073/pnas.2411833122

Abstact

To successfully mount infections, nearly all bacterial pathogens must acquire iron, a key metal cofactor that primarily resides within human hemoglobin. Corynebacterium diphtheriae causes the life-threatening respiratory disease diphtheria and captures hemoglobin for iron scavenging using the surface-displayed receptor HbpA. Here, we show using X-ray crystallography, NMR, and in situ binding measurements that C. diphtheriae selectively captures iron-loaded hemoglobin by partially ensconcing the heme molecules of its α subunits. Quantitative growth and heme release measurements are compatible with C. diphtheriae acquiring heme passively released from hemoglobin's β subunits. We propose a model in which HbpA and heme-binding receptors collectively function on the C. diphtheriae surface to capture hemoglobin and its spontaneously released heme. Acquisition mechanisms that exploit the propensity of hemoglobin's β subunit to release heme likely represent a common strategy used by bacterial pathogens to obtain iron during infections.

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Primary Citation of related structures