ISDA: 9BBJ

Deposition Date 2024-04-05

Release Date 2025-12-10

Last Version Date 2025-12-10

Entry Detail

PDB ID:

9BBJ

Keywords:

ANTIBIOTIC

Title:

M. tuberculosis ClpC1-NTD complexed with a click chemistry analog of Rufomycin

Biological Source:

Source Organism:

Mycobacterium tuberculosis (Taxon ID: 1773)
synthetic construct (Taxon ID: 32630)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.56 Å

R-Value Free:

0.29

R-Value Work:

0.25

R-Value Observed:

0.26

Space Group:

P 43 21 2

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:ATP-dependent Clp protease ATP-binding subunit ClpC1
Gene (Uniprot):clpC1
Chain IDs:A
Chain Length:158
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis

UniProt ID:P9WPC9 Pfam ID:PF02861 EC:3.4.21.92

Polymer Type:polypeptide(L)
Molecule:Click chemistry analog of Rufomycin
Chain IDs:B
Chain Length:7
Number of Molecules:1
Biological Source:synthetic construct

Ligand Molecules

Primary Citation

Unique Interactions of Novel Rufomycin Click Chemistry Analogs with Mtb ClpC1 and Implications

Ratia, K, Jin, S, Abad-Zapatero, C, Shetye, G.S, Demissie, R, Qader, M, Beautrait, A, Nikolic, D.S, Wolf, N.M, Rubin, E.J, Krandor, O, Serbina, N, Li, G, Pauli, G.F, Klein, L.L, Cho, S, Franzblau, S.G, Fotouhi, N, Kaneko, T, Lee, H, Wolf, N.Show

J.Med.Chem. ? ? ? (2025)

DOI: 10.1021/acs.jmedchem.5c02416

Primary Citation of related structures

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