9BA0 image
Deposition Date 2024-04-03
Release Date 2024-11-20
Last Version Date 2025-05-28
Entry Detail
PDB ID:
9BA0
Title:
Structural mechanism of CB1R binding to peripheral and biased inverse agonists
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Pyrococcus abyssi GE5 (Taxon ID: 272844)
Lama glama (Taxon ID: 9844)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.13 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:CNb36
Chain IDs:B (auth: N)
Chain Length:128
Number of Molecules:1
Biological Source:Lama glama
Polymer Type:polypeptide(L)
Molecule:Cannabinoid receptor 1,Glycogen synthase
Gene (Uniprot):CNR1, PAB2292
Chain IDs:A (auth: R)
Chain Length:535
Number of Molecules:1
Biological Source:Homo sapiens, Pyrococcus abyssi GE5
Ligand Molecules
Primary Citation
Structural mechanism of CB 1 R binding to peripheral and biased inverse agonists.
Nat Commun 15 10694 10694 (2024)
PMID: 39695122 DOI: 10.1038/s41467-024-54206-0

Abstact

The cannabinoid receptor 1 (CB1R) regulates synaptic transmission in the central nervous system, but also has important roles in the peripheral organs controlling cellular metabolism. While earlier generations of brain penetrant CB1R antagonists advanced to the clinic for their effective treatment of obesity, such molecules were ultimately shown to exhibit negative effects on central reward pathways that thwarted their further therapeutic development. The peripherally restricted CB1R inverse agonists MRI-1867 and MRI-1891 represent a new generation of compounds that retain the metabolic benefits of CB1R inhibitors while sparing the negative psychiatric effects. To understand the mechanism of binding and inhibition of CB1R by peripherally restricted antagonists, we developed a nanobody/fusion protein strategy for high-resolution cryo-EM structure determination of the GPCR inactive state, and used this method to determine structures of CB1R bound to either MRI-1867 or MRI-1891. These structures reveal how these compounds retain high affinity and specificity for CB1R's hydrophobic orthosteric site despite incorporating polar functionalities that lead to peripheral restriction. Further, the structure of the MRI-1891 complex along with accompanying molecular dynamics simulations shows how differential engagement with transmembrane helices and the proximal N-terminus can propagate through the receptor to contribute to biased inhibition of β-arrestin signaling.

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Primary Citation of related structures