9B7J image
Deposition Date 2024-03-27
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
9B7J
Keywords:
Title:
Cryo-EM structure of human dynactin complex bound to Chlamydia effector Dre1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
3.49 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-centractin
Gene (Uniprot):ACTR1A
Chain IDs:A, B, C, D, E, F, G, I
Chain Length:376
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin, cytoplasmic 1
Gene (Uniprot):ACTB
Chain IDs:H
Chain Length:375
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Actin-related protein 10
Gene (Uniprot):ACTR10
Chain IDs:J
Chain Length:417
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 4
Gene (Uniprot):DCTN4
Chain IDs:K
Chain Length:460
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 5
Gene (Uniprot):DCTN5
Chain IDs:L
Chain Length:182
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 6
Gene (Uniprot):DCTN6
Chain IDs:M
Chain Length:190
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:F-actin-capping protein subunit alpha-1
Gene (Uniprot):CAPZA1
Chain IDs:N
Chain Length:286
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:F-actin-capping protein subunit beta
Gene (Uniprot):CAPZB
Chain IDs:O
Chain Length:272
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2
Gene (Uniprot):DCTN2
Chain IDs:P, Q, V (auth: p), W (auth: q)
Chain Length:401
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 3
Gene (Uniprot):DCTN3
Chain IDs:R, X (auth: r)
Chain Length:186
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 1
Gene (Uniprot):DCTN1
Chain IDs:S
Chain Length:1278
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 1, p150-glued
Chain IDs:T
Chain Length:83
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 2, p50 dynamitin
Chain IDs:U
Chain Length:87
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Dynactin subunit 1
Gene (Uniprot):DCTN1
Chain IDs:Y (auth: s)
Chain Length:1278
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
The Chlamydia effector Dre1 binds dynactin to reposition host organelles during infection.
Cell Rep 44 115509 115509 (2025)
PMID: 40186871 DOI: 10.1016/j.celrep.2025.115509

Abstact

The obligate intracellular pathogen Chlamydia trachomatis replicates in a specialized membrane-bound compartment where it repositions host organelles during infection to acquire nutrients and evade host surveillance. We describe a bacterial effector, Dre1, that binds specifically to dynactin associated with host microtubule organizing centers without globally impeding dynactin function. Dre1 is required to reposition the centrosome, mitotic spindle, Golgi apparatus, and primary cilia around the inclusion and contributes to pathogen fitness in cell-based and mouse models of infection. We utilized Dre1 to affinity purify the megadalton dynactin protein complex and determined the first cryoelectron microscopy (cryo-EM) structure of human dynactin. Our results suggest that Dre1 binds to the pointed end of dynactin and uncovers the first bacterial effector that modulates dynactin function. Our work highlights how a pathogen employs a single effector to evoke targeted, large-scale changes in host cell organization that facilitate pathogen growth without inhibiting host viability.

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