9B45 image
Entry Detail
PDB ID:
9B45
EMDB ID:
Keywords:
Title:
Pseudomonas phage Pa193 baseplate complex and tail fiber
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-20
Release Date:
2024-10-16
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:gp47 Tail fiber
Chain IDs:G (auth: 2), H (auth: 3), I (auth: 4)
Chain Length:962
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp34 helical bundle
Chain IDs:J (auth: A), K (auth: B), L (auth: C), M (auth: D), N (auth: E), O (auth: F)
Chain Length:107
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp35 Sheath initiator
Chain IDs:TA (auth: G), UA (auth: H), VA (auth: I), WA (auth: J), XA (auth: K), YA (auth: L)
Chain Length:116
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp37 Baseplate tube
Chain IDs:NA (auth: M), OA (auth: N), PA (auth: O), QA (auth: P), RA (auth: Q), SA (auth: R)
Chain Length:417
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp38 Ripcord-1
Chain IDs:P (auth: S), Q (auth: T), R (auth: U)
Chain Length:180
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp39 Ripcord-2
Chain IDs:Y (auth: V), Z (auth: W), AA (auth: X)
Chain Length:197
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp41 Tape measure protein
Chain IDs:S (auth: a), T (auth: b), U (auth: c)
Chain Length:107
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp42 Tail hub
Chain IDs:V (auth: d), W (auth: e), X (auth: f)
Chain Length:287
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp44 Tail tip
Chain IDs:ZA (auth: g), AB (auth: h), BB (auth: i)
Chain Length:116
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp45-a Baseplate wedge 1
Chain IDs:A (auth: j), B (auth: k), C (auth: l), D (auth: m), E (auth: n), F (auth: o), HA (auth: q), IA (auth: p), JA (auth: r), KA (auth: s), LA (auth: t), MA (auth: u)
Chain Length:417
Number of Molecules:12
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp46 Baseplate wedge 2
Chain IDs:BA (auth: v), CA (auth: w), DA (auth: x), EA (auth: y), FA (auth: z), GA (auth: 1)
Chain Length:504
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Ligand Molecules
Primary Citation
Cryo-EM analysis of Pseudomonas phage Pa193 structural components.
Commun Biol 7 1275 1275 (2024)
PMID: 39370451 DOI: 10.1038/s42003-024-06985-x

Abstact

The World Health Organization has designated Pseudomonas aeruginosa as a critical pathogen for the development of new antimicrobials. Bacterial viruses, or bacteriophages, have been used in various clinical settings, commonly called phage therapy, to address this growing public health crisis. Here, we describe a high-resolution structural atlas of a therapeutic, contractile-tailed Pseudomonas phage, Pa193. We used bioinformatics, proteomics, and cryogenic electron microscopy single particle analysis to identify, annotate, and build atomic models for 21 distinct structural polypeptide chains forming the icosahedral capsid, neck, contractile tail, and baseplate. We identified a putative scaffolding protein stabilizing the interior of the capsid 5-fold vertex. We also visualized a large portion of Pa193 ~ 500 Å long tail fibers and resolved the interface between the baseplate and tail fibers. The work presented here provides a framework to support a better understanding of phages as biomedicines for phage therapy and inform engineering opportunities.

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