9B42 image
Entry Detail
PDB ID:
9B42
EMDB ID:
Keywords:
Title:
Pseudomonas phage Pa193 neck and extended tail (collar, gateway, tail tube, and sheath proteins)
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-20
Release Date:
2024-10-16
Method Details:
Experimental Method:
Resolution:
3.50 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:gp29 Collar
Chain IDs:B (auth: A), C (auth: B), D (auth: C), E (auth: D), F (auth: E), G (auth: F)
Chain Length:132
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp30 Gateway
Chain IDs:N (auth: J), O (auth: G), P (auth: H), Q (auth: I), R (auth: K), S (auth: L)
Chain Length:183
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp33 Tail tube
Chain IDs:H (auth: M), I (auth: N), J (auth: O), K (auth: P), L (auth: Q), M (auth: R)
Chain Length:150
Number of Molecules:6
Biological Source:Pseudomonas virus Pa193
Polymer Type:polypeptide(L)
Description:gp32 Sheath
Chain IDs:A (auth: S)
Chain Length:504
Number of Molecules:1
Biological Source:Pseudomonas virus Pa193
Ligand Molecules
Primary Citation
Cryo-EM analysis of Pseudomonas phage Pa193 structural components.
Commun Biol 7 1275 1275 (2024)
PMID: 39370451 DOI: 10.1038/s42003-024-06985-x

Abstact

The World Health Organization has designated Pseudomonas aeruginosa as a critical pathogen for the development of new antimicrobials. Bacterial viruses, or bacteriophages, have been used in various clinical settings, commonly called phage therapy, to address this growing public health crisis. Here, we describe a high-resolution structural atlas of a therapeutic, contractile-tailed Pseudomonas phage, Pa193. We used bioinformatics, proteomics, and cryogenic electron microscopy single particle analysis to identify, annotate, and build atomic models for 21 distinct structural polypeptide chains forming the icosahedral capsid, neck, contractile tail, and baseplate. We identified a putative scaffolding protein stabilizing the interior of the capsid 5-fold vertex. We also visualized a large portion of Pa193 ~ 500 Å long tail fibers and resolved the interface between the baseplate and tail fibers. The work presented here provides a framework to support a better understanding of phages as biomedicines for phage therapy and inform engineering opportunities.

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Primary Citation of related structures