9B40 image
Deposition Date 2024-03-20
Release Date 2024-10-16
Last Version Date 2024-10-16
Entry Detail
PDB ID:
9B40
Keywords:
Title:
Pseudomonas phage Pa193 5-fold vertex (capsid, decorating, and scaffolding proteins)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp26 Major capsid
Gene (Uniprot):Pa193_042
Chain IDs:A, B, C, D, E, I (auth: N), J (auth: O), K (auth: P), L (auth: Q), M (auth: R), N (auth: S)
Chain Length:382
Number of Molecules:11
Biological Source:Pseudomonas virus Pa193
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp24 Scaffolding protein
Gene (Uniprot):Pa193_040
Chain IDs:O (auth: G), P (auth: F), Q (auth: H), R (auth: I), S (auth: J)
Chain Length:478
Number of Molecules:5
Biological Source:Pseudomonas virus Pa193
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:gp25 Decorating protein
Gene (Uniprot):Pa193_041
Chain IDs:F (auth: K), G (auth: L), H (auth: M)
Chain Length:211
Number of Molecules:3
Biological Source:Pseudomonas virus Pa193
Ligand Molecules
Primary Citation
Cryo-EM analysis of Pseudomonas phage Pa193 structural components.
Commun Biol 7 1275 1275 (2024)
PMID: 39370451 DOI: 10.1038/s42003-024-06985-x

Abstact

The World Health Organization has designated Pseudomonas aeruginosa as a critical pathogen for the development of new antimicrobials. Bacterial viruses, or bacteriophages, have been used in various clinical settings, commonly called phage therapy, to address this growing public health crisis. Here, we describe a high-resolution structural atlas of a therapeutic, contractile-tailed Pseudomonas phage, Pa193. We used bioinformatics, proteomics, and cryogenic electron microscopy single particle analysis to identify, annotate, and build atomic models for 21 distinct structural polypeptide chains forming the icosahedral capsid, neck, contractile tail, and baseplate. We identified a putative scaffolding protein stabilizing the interior of the capsid 5-fold vertex. We also visualized a large portion of Pa193 ~ 500 Å long tail fibers and resolved the interface between the baseplate and tail fibers. The work presented here provides a framework to support a better understanding of phages as biomedicines for phage therapy and inform engineering opportunities.

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Primary Citation of related structures