9B3N image
Entry Detail
PDB ID:
9B3N
Title:
Human Notch-1 EGFs 20-24
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-03-19
Release Date:
2024-10-16
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Neurogenic locus notch homolog protein 1
Chain IDs:A
Chain Length:201
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural and functional studies of the EGF20-27 region reveal new features of the human Notch receptor important for optimal activation.
Structure 32 2325 2336.e5 (2024)
PMID: 39488203 DOI: 10.1016/j.str.2024.10.012

Abstact

The Notch receptor is activated by the Delta/Serrate/Lag-2 (DSL) family of ligands. The organization of the extracellular signaling complex is unknown, although structures of Notch/ligand complexes comprising the ligand-binding region (LBR), and negative regulatory region (NRR) region, have been solved. Here, we investigate the human Notch-1 epidermal growth factor-like (EGF) 20-27 region, located between the LBR and NRR, and incorporating the Abruptex (Ax) region, associated with distinctive Drosophila phenotypes. Our analyses, using crystallography, NMR and small angle X-ray scattering (SAXS), support a rigid, elongated organization for EGF20-27 with the EGF20-21 linkage showing Ca2+-dependent flexibility. In functional assays, Notch-1 variants containing Ax substitutions result in reduced ligand-dependent trans-activation. When cis-JAG1 was expressed, Notch activity differences between WT and Ca2+-binding Ax variants were less marked than seen in the trans-activation assays alone, consistent with disruption of cis-inhibition. These data indicate the importance of Ca2+-stabilized structure and suggest the balance of cis- and trans-interactions explains the effects of Drosophila Ax mutations.

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