9B3F image
Entry Detail
PDB ID:
9B3F
EMDB ID:
Title:
Cryo-EM structure of yeast (Nap1)2-H2A-H2B-Kap114
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-03-19
Release Date:
2024-11-27
Method Details:
Experimental Method:
Resolution:
3.54 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:KAP114 isoform 1
Chain IDs:C (auth: A)
Chain Length:1007
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Histone H2A
Chain IDs:D (auth: B)
Chain Length:131
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:Histone H2B
Chain IDs:E (auth: C)
Chain Length:130
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polypeptide(L)
Description:NAP1 isoform 1
Chain IDs:A (auth: D), B (auth: E)
Chain Length:313
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Nap1 and Kap114 co-chaperone H2A-H2B and facilitate targeted histone release in the nucleus.
J.Cell Biol. 224 ? ? (2025)
PMID: 39601790 DOI: 10.1083/jcb.202408193

Abstact

Core histones, synthesized and processed in the cytoplasm, must be chaperoned as they are transported into the nucleus for nucleosome assembly. The importin Kap114 transports H2A-H2B into the yeast nucleus, where RanGTP facilitates histone release. Kap114 and H2A-H2B also bind the histone chaperone Nap1, but how Nap1 and Kap114 cooperate in transport and nucleosome assembly remains unclear. Here, biochemical and structural analyses show that Kap114, H2A-H2B, and a Nap1 dimer (Nap12) associate in the absence and presence of RanGTP to form equimolar complexes. A previous study had shown that RanGTP reduces Kap114's ability to chaperone H2A-H2B, but a new cryo-EM structure of the Nap12•H2A-H2B•Kap114•RanGTP complex explains how both Kap114 and Nap12 interact with H2A-H2B, restoring its chaperoning within the assembly while effectively depositing it into nucleosomes. Together, our results suggest that Kap114 and Nap12 provide a sheltered path that facilitates the transfer of H2A-H2B from Kap114 to Nap12, ultimately directing its specific deposition into nucleosomes.

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Primary Citation of related structures