ISDA: 9B3B

Deposition Date 2024-03-18

Release Date 2024-09-25

Last Version Date 2024-11-20

Entry Detail

PDB ID:

9B3B

Keywords:

DNA BINDING PROTEIN

Title:

Structure of TDP1 complexed with compound IB09

Biological Source:

Source Organism:

Homo sapiens (Taxon ID: 9606)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

1.62 Å

R-Value Free:

0.18

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 21 21 21

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Tyrosyl-DNA phosphodiesterase 1
Gene (Uniprot):TDP1
Chain IDs:A, B
Chain Length:461
Number of Molecules:2
Biological Source:Homo sapiens

UniProt ID:Q9NUW8 Pfam ID:PF06087 EC:3.1.4.1

Ligand Molecules

A1AIM

DMS

EDO

Primary Citation

Structure of TDP1 complexed with compound IB09

Lountos, G.T, Zhao, X.Z, Barakat, I, Wang, W, Agama, K, Al Mahmud, M.R, Pommier, Y, Burke, T.R.Show

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Primary Citation of related structures