9B1X image
Deposition Date 2024-03-14
Release Date 2025-03-26
Last Version Date 2025-03-26
Entry Detail
PDB ID:
9B1X
Keywords:
RIBOSOME
Title:
HWS19 strain gidB mutant mycobacterial ribosome
Biological Source:
Source Organism:
Mycolicibacterium smegmatis (Taxon ID: 1772)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.07 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
9B1X validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL35
Gene (Uniprot):rpmI
Chain IDs:AB (auth: 1)
Chain Length:64
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QYU7 Pfam ID:PF01632
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein L36
Gene (Uniprot):rpmJ
Chain IDs:BB (auth: 2)
Chain Length:37
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSL4 Pfam ID:PF00444
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:50S ribosomal protein bL37
Gene (Uniprot):MSMEG_1916
Chain IDs:UA (auth: 5)
Chain Length:24
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QTP4
Polymer Type:polyribonucleotide
Molecule:16S rRNA
Chain IDs:A
Chain Length:217
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Conserved domain protein
Gene (Uniprot):MSMEG_0945
Chain IDs:B
Chain Length:215
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QR10 Pfam ID:PF08213
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS3
Gene (Uniprot):rpsC
Chain IDs:C
Chain Length:187
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD7 Pfam ID:PF07650, PF00189
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS4
Gene (Uniprot):rpsD
Chain IDs:D
Chain Length:179
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSL7 Pfam ID:PF00163, PF01479
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS5
Gene (Uniprot):rpsE
Chain IDs:E
Chain Length:214
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG6 Pfam ID:PF00333, PF03719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS6
Chain IDs:F
Chain Length:96
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R7F9 Pfam ID:PF01250
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS7
Gene (Uniprot):rpsG
Chain IDs:G
Chain Length:122
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QS97 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS8
Gene (Uniprot):rpsH
Chain IDs:H
Chain Length:132
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG3 Pfam ID:PF00410
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS9
Gene (Uniprot):rpsI
Chain IDs:I
Chain Length:138
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSP9 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS10
Gene (Uniprot):rpsJ
Chain IDs:J
Chain Length:199
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD0 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS11
Gene (Uniprot):rpsK
Chain IDs:K
Chain Length:138
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSL6 Pfam ID:PF00411
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS12
Gene (Uniprot):rpsL
Chain IDs:L
Chain Length:124
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QS96 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS13
Gene (Uniprot):rpsM
Chain IDs:M
Chain Length:129
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSL5 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS14B
Gene (Uniprot):rpsZ
Chain IDs:N
Chain Length:61
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG2 Pfam ID:PF00253
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS15
Gene (Uniprot):rpsO
Chain IDs:O
Chain Length:89
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QVQ3 Pfam ID:PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS16
Gene (Uniprot):rpsP
Chain IDs:P
Chain Length:156
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QV37 Pfam ID:PF00886
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS17
Gene (Uniprot):rpsQ
Chain IDs:Q
Chain Length:105
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSE0 Pfam ID:PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS18B
Gene (Uniprot):rpsR2
Chain IDs:R
Chain Length:84
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R7F7 Pfam ID:PF01084
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS19
Gene (Uniprot):rpsS
Chain IDs:S
Chain Length:88
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD5 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein bS20
Gene (Uniprot):rpsT
Chain IDs:T
Chain Length:64
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R102 Pfam ID:PF01649
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:X (auth: U)
Chain Length:118
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Small ribosomal subunit protein uS2
Gene (Uniprot):rpsB
Chain IDs:U (auth: V)
Chain Length:277
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QVB8 Pfam ID:PF00318
Polymer Type:polyribonucleotide
Molecule:mRNA fragment
Chain IDs:V (auth: X)
Chain Length:57
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
Polymer Type:polyribonucleotide
Molecule:23S rRNA
Chain IDs:W (auth: Y)
Chain Length:3120
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL2
Gene (Uniprot):rplB
Chain IDs:Y (auth: Z)
Chain Length:47
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD4 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL3
Gene (Uniprot):rplC
Chain IDs:Z (auth: a)
Chain Length:217
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD1 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL4
Gene (Uniprot):rplD
Chain IDs:AA (auth: b)
Chain Length:215
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD2 Pfam ID:PF00573
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL5
Gene (Uniprot):rplE
Chain IDs:BA (auth: c)
Chain Length:187
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG1 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL6
Gene (Uniprot):rplF
Chain IDs:CA (auth: d)
Chain Length:179
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG4 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL11
Gene (Uniprot):rplK
Chain IDs:DA (auth: e)
Chain Length:214
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QS45 Pfam ID:PF03946, PF00298
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL13
Gene (Uniprot):rplM
Chain IDs:EA (auth: f)
Chain Length:96
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSP8 Pfam ID:PF00572
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL14
Gene (Uniprot):rplN
Chain IDs:FA (auth: g)
Chain Length:122
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSF9 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL15
Gene (Uniprot):rplO
Chain IDs:GA (auth: h)
Chain Length:132
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG8 Pfam ID:PF00828
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL16
Gene (Uniprot):rplP
Chain IDs:HA (auth: i)
Chain Length:138
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD8 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL17
Gene (Uniprot):rplQ
Chain IDs:IA (auth: j)
Chain Length:199
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSL9 Pfam ID:PF01196
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL18
Gene (Uniprot):rplR
Chain IDs:JA (auth: k)
Chain Length:138
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG5 Pfam ID:PF00861
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL19
Gene (Uniprot):rplS
Chain IDs:KA (auth: l)
Chain Length:124
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QV42 Pfam ID:PF01245
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL20
Gene (Uniprot):rplT
Chain IDs:LA (auth: m)
Chain Length:129
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QYU6 Pfam ID:PF00453
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL21
Gene (Uniprot):rplU
Chain IDs:MA (auth: n)
Chain Length:61
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R151 Pfam ID:PF00829
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL22
Gene (Uniprot):rplV
Chain IDs:NA (auth: o)
Chain Length:89
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD6 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL23
Gene (Uniprot):rplW
Chain IDs:OA (auth: p)
Chain Length:156
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD3 Pfam ID:PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL24
Gene (Uniprot):rplX
Chain IDs:PA (auth: q)
Chain Length:105
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG0 Pfam ID:PF00467, PF17136
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL25
Gene (Uniprot):rplY
Chain IDs:QA (auth: r)
Chain Length:84
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R3D2 Pfam ID:PF01386, PF14693
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL27
Gene (Uniprot):rpmA
Chain IDs:RA (auth: s)
Chain Length:88
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R150 Pfam ID:PF01016
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL28
Gene (Uniprot):rpmB
Chain IDs:SA (auth: t)
Chain Length:64
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QV03 Pfam ID:PF00830
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL29
Gene (Uniprot):rpmC
Chain IDs:TA (auth: u)
Chain Length:118
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSD9 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL10
Gene (Uniprot):rplJ
Chain IDs:VA (auth: v)
Chain Length:277
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QS62 Pfam ID:PF00466
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein uL30
Gene (Uniprot):rpmD
Chain IDs:WA (auth: w)
Chain Length:61
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QSG7 Pfam ID:PF00327
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL32
Gene (Uniprot):rpmF
Chain IDs:XA (auth: x)
Chain Length:57
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R3I9 Pfam ID:PF01783
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL33A
Gene (Uniprot):rpmG1
Chain IDs:YA (auth: y)
Chain Length:3120
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0QS39 Pfam ID:PF00471
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Large ribosomal subunit protein bL34
Gene (Uniprot):rpmH
Chain IDs:ZA (auth: z)
Chain Length:47
Number of Molecules:1
Biological Source:Mycolicibacterium smegmatis
UniProt ID:A0R7K0 Pfam ID:PF00468
Ligand Molecules
MG
ZN
Primary Citation
Ribosomal RNA methylation by GidB is a capacitor for discrimination of mischarged tRNA
To be published ? ? ? (?)
Primary Citation of related structures
9B1X