9AYZ image
Deposition Date 2024-03-09
Release Date 2024-12-11
Last Version Date 2025-02-19
Entry Detail
PDB ID:
9AYZ
Title:
T-state HbG Makassar hemoglobin
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.24 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit alpha
Gene (Uniprot):HBA1, HBA2
Chain IDs:A, C, E, G
Chain Length:141
Number of Molecules:4
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Hemoglobin subunit beta
Gene (Uniprot):HBB
Mutagens:E6A
Chain IDs:B, D, F, H
Chain Length:146
Number of Molecules:4
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Base editing HbS to HbG-Makassar improves hemoglobin function supporting its use in sickle cell disease.
Nat Commun 16 1441 1441 (2025)
PMID: 39920120 DOI: 10.1038/s41467-025-56578-3

Abstact

Adenine base editing can convert sickle hemoglobin (HbS, βΕ6V) to G-Makassar hemoglobin (HbG, βE6A), a naturally occurring variant that is clinically asymptomatic. However, the quality and functionality of purified HbG and of mature HbGG and HbGS red blood cells (RBC) has not been assessed. Here, we develop a mouse model to characterize HbG. Purified HbG appears normal and does not polymerize under hypoxia. The topology of the hemoglobin fold with the βΕ6Α mutation is similar to HbA in the oxy and deoxy states. However, RBC containing HbGS are dehydrated, showing altered function and increased sickling under hypoxia. Blood counts and mitochondrial retention measures place HbGS RBCs as intermediate in severity between HbAS and HbSS, while organ function is comparable to HbAS. HbGG resembles HbAA for most metrics. Our results highlight the importance of functionally assessing the mature red cell environment when evaluating novel gene editing strategies for hematologic disorders.

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Protein

Chemical

Disease

Primary Citation of related structures