9AXE image
Deposition Date 2024-03-06
Release Date 2024-08-21
Last Version Date 2024-09-11
Entry Detail
PDB ID:
9AXE
Keywords:
Title:
Cryo-EM reconstruction of a Staphylococcus aureus oleate hydratase (OhyA) assembly of dimers bound to a liposome
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Oleate hydratase
Gene (Uniprot):ACR74_07640, CNH36_00305, EIG96_01565, EP54_06595, EQ90_12415, GO814_02765, GO942_14045, HMPREF3211_02399
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N
Chain Length:611
Number of Molecules:14
Biological Source:Staphylococcus aureus
Ligand Molecules
Primary Citation
Cryo-EM reconstruction of oleate hydratase bound to a phospholipid membrane bilayer.
J.Struct.Biol. 216 108116 108116 (2024)
PMID: 39151742 DOI: 10.1016/j.jsb.2024.108116

Abstact

Oleate hydratase (OhyA) is a bacterial peripheral membrane protein that catalyzes FAD-dependent water addition to membrane bilayer-embedded unsaturated fatty acids. The opportunistic pathogen Staphylococcus aureus uses OhyA to counteract the innate immune system and support colonization. Many Gram-positive and Gram-negative bacteria in the microbiome also encode OhyA. OhyA is a dimeric flavoenzyme whose carboxy terminus is identified as the membrane binding domain; however, understanding how OhyA binds to cellular membranes is not complete until the membrane-bound structure has been elucidated. All available OhyA structures depict the solution state of the protein outside its functional environment. Here, we employ liposomes to solve the cryo-electron microscopy structure of the functional unit: the OhyA•membrane complex. The protein maintains its structure upon membrane binding and slightly alters the curvature of the liposome surface. OhyA preferentially associates with 20-30 nm liposomes with multiple copies of OhyA dimers assembling on the liposome surface resulting in the formation of higher-order oligomers. Dimer assembly is cooperative and extends along a formed ridge of the liposome. We also solved an OhyA dimer of dimers structure that recapitulates the intermolecular interactions that stabilize the dimer assembly on the membrane bilayer as well as the crystal contacts in the lattice of the OhyA crystal structure. Our work enables visualization of the molecular trajectory of membrane binding for this important interfacial enzyme.

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Primary Citation of related structures