9AWE image
Entry Detail
PDB ID:
9AWE
Keywords:
Title:
The crystal structure of an engineered Protein GF with Human Kappa Fab
Biological Source:
PDB Version:
Deposition Date:
2024-03-05
Release Date:
2025-02-05
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 2 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Histone chaperone ASF1
Chain IDs:C (auth: A)
Chain Length:161
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Fab Heavy Chain
Chain IDs:A (auth: B)
Chain Length:228
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Immunoglobulin G-binding protein G
Chain IDs:D (auth: C)
Chain Length:65
Number of Molecules:1
Biological Source:Streptococcus sp. 'group G'
Polymer Type:polypeptide(L)
Description:Fab Light Chain
Chain IDs:B (auth: D)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Engineered protein G variants for multifunctional antibody-based assemblies.
Protein Sci. 34 e70019 e70019 (2025)
PMID: 39865354 DOI: 10.1002/pro.70019

Abstact

We have developed a portfolio of antibody-based modules that can be prefabricated as standalone units and snapped together in plug-and-play fashion to create uniquely powerful multifunctional assemblies. The basic building blocks are derived from multiple pairs of native and modified Fab scaffolds and protein G (PG) variants engineered by phage display to introduce high pair-wise specificity. The variety of possible Fab-PG pairings provides a highly orthogonal system that can be exploited to perform challenging cell biology operations in a straightforward manner. The simplest manifestation allows multiplexed antigen detection using PG variants fused to fluorescently labeled SNAP-tags. Moreover, Fabs can be readily attached to a PG-Fc dimer module which acts as the core unit to produce plug-and-play IgG-like assemblies, and the utility can be further expanded to produce bispecific analogs using the "knobs into holes" strategy. These core PG-Fc dimer modules can be made and stored in bulk to produce off-the-shelf customized IgG entities in minutes, not days or weeks by just adding a Fab with the desired antigen specificity. In another application, the bispecific modalities form the building block for fabricating potent bispecific T-cell engagers (BiTEs), demonstrating their efficacy in cancer cell-killing assays. Additionally, the system can be adapted to include commercial antibodies as building blocks, greatly increasing the target space. Crystal structure analysis reveals that a few strategically positioned interactions engender the specificity between the Fab-PG variant pairs, requiring minimal changes to match the scaffolds for different possible combinations. This plug-and-play platform offers a user-friendly and versatile approach to enhance the functionality of antibody-based reagents in cell biology research.

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