9AQZ image
Entry Detail
PDB ID:
9AQZ
Keywords:
Title:
Crystal structure of Bcl-xL in complex with a small molecule inhibitor
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-02-22
Release Date:
2024-10-16
Method Details:
Experimental Method:
Resolution:
1.96 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
I 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Bcl-2-like protein 1
Mutations:W24A,E158K,D189A
Chain IDs:A
Chain Length:167
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation

Abstact

Overexpression of the antiapoptotic protein B-cell lymphoma-extra large (BCL-XL) is associated with drug resistance and disease progression in numerous cancers. The compelling nature of this protein as a therapeutic target prompted efforts to develop selective small-molecule BCL-XL inhibitors. Although efficacious in preclinical models, we report herein that selective BCL-XL inhibitors cause severe mechanism-based cardiovascular toxicity in higher preclinical species. To overcome this liability, antibody-drug conjugates were constructed using altered BCL-XL-targeting warheads, unique linker technologies, and therapeutic antibodies. The epidermal growth factor receptor-targeting antibody-drug conjugate AM1-15 inhibited growth of tumor xenografts and did not cause cardiovascular toxicity nor dose-limiting thrombocytopenia in monkeys. While an unprecedented BCL-XL-mediated toxicity was uncovered in monkey kidneys upon repeat dosing of AM1-15, this toxicity was mitigated via further drug-linker modification to afford AM1-AAA (AM1-25). The AAA drug-linker has since been incorporated into mirzotamab clezutoclax, the first selective BCL-XL-targeting agent to enter human clinical trials.

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Primary Citation of related structures