8p2k image
Deposition Date 2023-05-16
Release Date 2023-07-19
Last Version Date 2024-04-24
Entry Detail
PDB ID:
8P2K
Keywords:
TRANSLATION
Title:
Ternary complex of translating ribosome, NAC and METAP1
Biological Source:
Source Organism:
Oryctolagus cuniculus (Taxon ID: 9986)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Oryctolagus cuniculus
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8p2k validation report
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:18s rRNA
Chain IDs:ZA (auth: A2)
Chain Length:1870
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S27
Gene (Uniprot):RPS27
Chain IDs:AB (auth: AA)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TZ76 Pfam ID:PF01667
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S28
Gene (Uniprot):RPS28
Chain IDs:BB (auth: AB)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TIB4 Pfam ID:PF01200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S27a
Gene (Uniprot):RPS27A
Chain IDs:CB (auth: AC)
Chain Length:281
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SK22 Pfam ID:PF00240, PF01599
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S30
Gene (Uniprot):FAU
Chain IDs:DB (auth: AD)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T8A2 Pfam ID:PF00240, PF04758
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eS26
Chain IDs:EB (auth: AE)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2K5LQY6 Pfam ID:PF01283
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:RACK1
Gene (Uniprot):RACK1
Chain IDs:FB (auth: AF)
Chain Length:317
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SJB4 Pfam ID:PF00400
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S29
Gene (Uniprot):RPS29
Chain IDs:GB (auth: AG)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U7M4 Pfam ID:PF00253
Polymer Type:polyribonucleotide
Molecule:E-site tRNA
Chain IDs:HB (auth: AI)
Chain Length:76
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:P-site Val-tRNA
Chain IDs:IB (auth: AT)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein SA
Gene (Uniprot):RPSA
Chain IDs:JB (auth: AZ)
Chain Length:295
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TLT8 Pfam ID:PF00318, PF16122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3a
Gene (Uniprot):RPS3A
Chain IDs:KB (auth: Aa)
Chain Length:84
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SS70 Pfam ID:PF01015
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S2
Gene (Uniprot):RPS2
Chain IDs:LB (auth: Ab)
Chain Length:69
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:O18789 Pfam ID:PF00333, PF03719
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S3
Gene (Uniprot):RPS3
Chain IDs:MB (auth: Ac)
Chain Length:281
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TNM3 Pfam ID:PF07650, PF00189
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S4
Gene (Uniprot):RPS4X
Chain IDs:NB (auth: Ad)
Chain Length:133
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TK17 Pfam ID:PF08071, PF00900, PF00467, PF16121
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S5
Gene (Uniprot):RPS5
Chain IDs:OB (auth: Ae)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TFM5 Pfam ID:PF00177
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S6
Gene (Uniprot):RPS6
Chain IDs:PB (auth: Af)
Chain Length:317
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TM55 Pfam ID:PF01092
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S7
Gene (Uniprot):RPS7
Chain IDs:QB (auth: Ag)
Chain Length:56
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVB0
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S8
Gene (Uniprot):RPS8
Chain IDs:RB (auth: Ah)
Chain Length:208
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TJW1 Pfam ID:PF01201
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S9
Gene (Uniprot):RPS9
Chain IDs:SB (auth: Ai)
Chain Length:76
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZS8 Pfam ID:PF00163, PF01479
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:S10_plectin domain-containing protein
Chain IDs:TB (auth: Aj)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TPV3 Pfam ID:PF03501
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S11
Gene (Uniprot):RPS11
Chain IDs:UB (auth: Ak)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TRM4 Pfam ID:PF16205, PF00366
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S12
Gene (Uniprot):RPS12
Chain IDs:VB (auth: Al)
Chain Length:132
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SFR8 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S13
Gene (Uniprot):RPS13
Chain IDs:WB (auth: Am)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SP51 Pfam ID:PF08069, PF00312
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S14
Chain IDs:XB (auth: An)
Chain Length:151
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T1F0 Pfam ID:PF00411
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein uS19
Gene (Uniprot):RPS15
Chain IDs:YB (auth: Ao)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U0Q2 Pfam ID:PF00203
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uS9
Gene (Uniprot):RPS16
Chain IDs:ZB (auth: Ap)
Chain Length:172
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGX4 Pfam ID:PF00380
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein eS17
Gene (Uniprot):RPS17
Chain IDs:AC (auth: Aq)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TU13 Pfam ID:PF00833
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S18
Gene (Uniprot):RPS18
Chain IDs:BC (auth: Ar)
Chain Length:152
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TPG3 Pfam ID:PF00416
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S19
Gene (Uniprot):RPS19
Chain IDs:CC (auth: As)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TN62 Pfam ID:PF01090
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein uS10
Gene (Uniprot):RPS20
Chain IDs:DC (auth: At)
Chain Length:119
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIZ2 Pfam ID:PF00338
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S21
Chain IDs:EC (auth: Au)
Chain Length:83
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1Z5KTU7 Pfam ID:PF01249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein S15a
Gene (Uniprot):RPS15A
Chain IDs:FC (auth: Av)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TG89 Pfam ID:PF00410
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S23
Gene (Uniprot):RPS23
Chain IDs:GC (auth: Aw)
Chain Length:143
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ47 Pfam ID:PF00164
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S24
Gene (Uniprot):LOC100338405
Chain IDs:HC (auth: Ax)
Chain Length:130
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T3D8 Pfam ID:PF01282
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:40S ribosomal protein S25
Gene (Uniprot):RPS25
Chain IDs:IC (auth: Ay)
Chain Length:124
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TDB3 Pfam ID:PF03297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L41
Gene (Uniprot):RPL41
Chain IDs:JC (auth: Az)
Chain Length:295
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A087WNH4 Pfam ID:PF05162
Polymer Type:polyribonucleotide
Molecule:28S rRNA
Chain IDs:A (auth: B5)
Chain Length:4808
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5S rRNA
Chain IDs:B (auth: B7)
Chain Length:120
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Polymer Type:polyribonucleotide
Molecule:5.8S rRNA
Chain IDs:C (auth: B8)
Chain Length:158
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L8
Gene (Uniprot):Rpl8
Chain IDs:D (auth: BA)
Chain Length:148
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:F2X241 Pfam ID:PF00181, PF03947
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L3
Gene (Uniprot):RPL3
Chain IDs:E (auth: BB)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TL06 Pfam ID:PF00297
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L4
Gene (Uniprot):RPL4
Chain IDs:F (auth: BC)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SVW5 Pfam ID:PF00573, PF14374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L5 eukaryotic C-terminal domain-containing protein
Chain IDs:G (auth: BD)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P19949
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L6
Gene (Uniprot):RPL6
Chain IDs:H (auth: BE)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SKF7 Pfam ID:PF03868, PF01159
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal Protein uL30
Gene (Uniprot):LOC100341489
Chain IDs:I (auth: BF)
Chain Length:110
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUB1 Pfam ID:PF08079, PF00327
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L7a
Gene (Uniprot):RPL7A
Chain IDs:J (auth: BG)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P62424 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L9
Gene (Uniprot):RPL9
Chain IDs:K (auth: BH)
Chain Length:123
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SWI6 Pfam ID:PF00347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L10
Gene (Uniprot):RPL10
Chain IDs:L (auth: BI)
Chain Length:105
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:B7NZQ2 Pfam ID:PF00252
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L11
Gene (Uniprot):RPL11
Chain IDs:M (auth: BJ)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUB8 Pfam ID:PF00281, PF00673
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Glucose-6-phosphate isomerase
Gene (Uniprot):GPI
Chain IDs:N (auth: BK)
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:P06744 EC:5.3.1.9
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13
Gene (Uniprot):RPL13
Chain IDs:O (auth: BL)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TKB3 Pfam ID:PF01294
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L14
Gene (Uniprot):RPL14
Chain IDs:P (auth: BM)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SZ12 Pfam ID:PF01929
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L15
Gene (Uniprot):RPL15
Chain IDs:Q (auth: BN)
Chain Length:204
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T0C1 Pfam ID:PF00827
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L13a
Gene (Uniprot):RPL13A
Chain IDs:R (auth: BO)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A0N8ETI8 Pfam ID:PF00572
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:uL22
Chain IDs:S (auth: BP)
Chain Length:184
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SCJ6 Pfam ID:PF00237
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL18
Gene (Uniprot):RPL18
Chain IDs:T (auth: BQ)
Chain Length:188
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:F6QKI9 Pfam ID:PF17135
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L19
Gene (Uniprot):RPL19
Chain IDs:U (auth: BR)
Chain Length:196
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TYL6 Pfam ID:PF01280
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L18a
Chain IDs:V (auth: BS)
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A1Z5LHJ5 Pfam ID:PF01775
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L21
Gene (Uniprot):RPL21
Chain IDs:W (auth: BT)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHQ2 Pfam ID:PF01157
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L22
Gene (Uniprot):RPL22
Chain IDs:X (auth: BU)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TSG1 Pfam ID:PF01776
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L23
Gene (Uniprot):RPL23
Chain IDs:Y (auth: BV)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T6D1 Pfam ID:PF00238
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L24
Gene (Uniprot):RPL24
Chain IDs:Z (auth: BW)
Chain Length:157
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE28 Pfam ID:PF01246
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal_L23eN domain-containing protein
Gene (Uniprot):RPL23A
Chain IDs:AA (auth: BX)
Chain Length:156
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SE76 Pfam ID:PF03939, PF00276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L26
Gene (Uniprot):RPL26
Chain IDs:BA (auth: BY)
Chain Length:145
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SQH0 Pfam ID:PF16906, PF00467
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27
Gene (Uniprot):RPL27
Chain IDs:CA (auth: BZ)
Chain Length:136
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TXF6 Pfam ID:PF00467, PF01777
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L27a
Gene (Uniprot):RPL27A
Chain IDs:DA (auth: Ba)
Chain Length:148
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SNY0 Pfam ID:PF00828
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L29
Gene (Uniprot):RPL29
Chain IDs:EA (auth: Bb)
Chain Length:245
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SGR6 Pfam ID:PF01779
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L30
Gene (Uniprot):RPL30
Chain IDs:FA (auth: Bc)
Chain Length:115
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TDL2 Pfam ID:PF01248
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L31
Gene (Uniprot):RPL31
Chain IDs:GA (auth: Bd)
Chain Length:297
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SHG0 Pfam ID:PF01198
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L32
Chain IDs:HA (auth: Be)
Chain Length:135
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TUN8 Pfam ID:PF01655
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35a
Gene (Uniprot):RPL35A
Chain IDs:IA (auth: Bf)
Chain Length:110
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SF08 Pfam ID:PF01247
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L34
Gene (Uniprot):RPL34
Chain IDs:JA (auth: Bg)
Chain Length:117
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TXG5 Pfam ID:PF01199
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L35
Gene (Uniprot):RPL35
Chain IDs:KA (auth: Bh)
Chain Length:123
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SIT5 Pfam ID:PF00831
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L36
Gene (Uniprot):RPL36
Chain IDs:LA (auth: Bi)
Chain Length:105
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTQ5 Pfam ID:PF01158
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein L37
Gene (Uniprot):RPL37
Chain IDs:MA (auth: Bj)
Chain Length:178
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:U3KPD5 Pfam ID:PF01907
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L38
Gene (Uniprot):RPL38
Chain IDs:NA (auth: Bk)
Chain Length:70
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U001 Pfam ID:PF01781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L39-like
Gene (Uniprot):LOC100343258
Chain IDs:OA (auth: Bl)
Chain Length:211
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1TTN1 Pfam ID:PF00832
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-60S ribosomal protein L40
Gene (Uniprot):UBA52
Chain IDs:PA (auth: Bm)
Chain Length:128
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:A0A2I3MBB6 Pfam ID:PF00240, PF01020
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:eL42
Chain IDs:QA (auth: Bo)
Chain Length:106
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1T040 Pfam ID:PF00935
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L37a
Gene (Uniprot):RPL37A
Chain IDs:RA (auth: Bp)
Chain Length:184
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SY53 Pfam ID:PF01780
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L28
Gene (Uniprot):RPL28
Chain IDs:SA (auth: Br)
Chain Length:196
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1U7L1 Pfam ID:PF01778
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S acidic ribosomal protein P0
Gene (Uniprot):RPLP0
Chain IDs:TA (auth: Bs)
Chain Length:318
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SPK4 Pfam ID:PF00466, PF17777, PF00428
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:60S ribosomal protein L12
Gene (Uniprot):RPL12
Chain IDs:UA (auth: Bt)
Chain Length:165
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SMR7 Pfam ID:PF03946, PF00298
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ribosomal protein uL1
Gene (Uniprot):RPL10A
Chain IDs:VA (auth: Bv)
Chain Length:140
Number of Molecules:1
Biological Source:Oryctolagus cuniculus
UniProt ID:G1SKZ8 Pfam ID:PF00687
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Methionine aminopeptidase 1
Gene (Uniprot):METAP1
Chain IDs:WA (auth: MA)
Chain Length:386
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P53582 Pfam ID:PF15801, PF00557 EC:3.4.11.18
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Nascent polypeptide-associated complex subunit alpha
Gene (Uniprot):NACA
Chain IDs:XA (auth: Na)
Chain Length:215
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q13765 Pfam ID:PF01849, PF19026
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription factor BTF3
Gene (Uniprot):BTF3
Chain IDs:YA (auth: Nb)
Chain Length:132
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:A0A7I2YQL2 Pfam ID:PF01849
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
6MZ ZA A modified residue
A2M ZA A modified residue
AME EC MET modified residue
AYA F ALA modified residue
G7M ZA G modified residue
HIC E HIS modified residue
HY3 GC PRO modified residue
M3L PA LYS modified residue
MA6 ZA A modified residue
MLZ EA LYS modified residue
NMM CC ARG modified residue
OMC ZA C modified residue
OMG C G modified residue
OMU ZA U modified residue
PSU C U modified residue
SAC SA SER modified residue
V5N D HIS modified residue
Ligand Molecules
AAC
GTP
MG
N
SPD
SPM
UNX
ZN
Primary Citation
NAC controls cotranslational N-terminal methionine excision in eukaryotes.
Science 380 1238 1243 (2023)
PMID: 37347872 DOI: 10.1126/science.adg3297

Abstact

N-terminal methionine excision from newly synthesized proteins, catalyzed cotranslationally by methionine aminopeptidases (METAPs), is an essential and universally conserved process that plays a key role in cell homeostasis and protein biogenesis. However, how METAPs interact with ribosomes and how their cleavage specificity is ensured is unknown. We discovered that in eukaryotes the nascent polypeptide-associated complex (NAC) controls ribosome binding of METAP1. NAC recruits METAP1 using a long, flexible tail and provides a platform for the formation of an active methionine excision complex at the ribosomal tunnel exit. This mode of interaction ensures the efficient excision of methionine from cytosolic proteins, whereas proteins targeted to the endoplasmic reticulum are spared. Our results suggest a broader mechanism for how access of protein biogenesis factors to translating ribosomes is controlled.

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Disease

Primary Citation of related structures
7O7Y
7QWR
2B3K