8ZXR image
Deposition Date 2024-06-14
Release Date 2024-12-25
Last Version Date 2025-04-16
Entry Detail
PDB ID:
8ZXR
Title:
Crystal structure of Ssr1698 in complex with heme c
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 63 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ssr1698 protein
Gene (Uniprot):ssr1698
Chain IDs:A
Chain Length:105
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Polymer Type:polypeptide(L)
Molecule:Cytochrome c
Gene (Uniprot):CYCS
Chain IDs:B
Chain Length:11
Number of Molecules:1
Biological Source:Equus caballus
Primary Citation
Structural Basis for Monomer-Dimer Transition of Dri1 Upon Heme Binding.
Proteins 93 949 956 (2025)
PMID: 39670557 DOI: 10.1002/prot.26778

Abstact

Domain related to iron (DRI) contains approximately 90 residues and is involved in iron and heme metabolism. Recent discoveries have annotated Dri1, a DRI-only protein from the cyanobacterium Synechocystis, as a regulator of succinate dehydrogenase in a b-type heme-dependent manner or as a c-type heme oxygenase. Here, we report high-resolution structures of Dri1 in complex with b-type and c-type hemes, respectively. Bis-His-ligated heme is located in the middle of the dimeric Dri1 complex with heme b, as well as in the complex of monomeric Dri1 with c-type heme, but distinct heme binding modes are revealed. Structural analyses suggest that Dri1 may participate in the succinate dehydrogenase activity and/or the metabolism of cytochromes.

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Primary Citation of related structures