8ZXQ image
Entry Detail
PDB ID:
8ZXQ
Title:
Crystal structure of Ssr1698 in complex with heme b
Biological Source:
PDB Version:
Deposition Date:
2024-06-14
Release Date:
2024-12-25
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Ssr1698 protein
Chain IDs:A
Chain Length:105
Number of Molecules:1
Biological Source:Synechocystis sp. (strain PCC 6803 / Kazusa)
Ligand Molecules
Primary Citation
Structural Basis for Monomer-Dimer Transition of Dri1 Upon Heme Binding.
Proteins 93 949 956 (2025)
PMID: 39670557 DOI: 10.1002/prot.26778

Abstact

Domain related to iron (DRI) contains approximately 90 residues and is involved in iron and heme metabolism. Recent discoveries have annotated Dri1, a DRI-only protein from the cyanobacterium Synechocystis, as a regulator of succinate dehydrogenase in a b-type heme-dependent manner or as a c-type heme oxygenase. Here, we report high-resolution structures of Dri1 in complex with b-type and c-type hemes, respectively. Bis-His-ligated heme is located in the middle of the dimeric Dri1 complex with heme b, as well as in the complex of monomeric Dri1 with c-type heme, but distinct heme binding modes are revealed. Structural analyses suggest that Dri1 may participate in the succinate dehydrogenase activity and/or the metabolism of cytochromes.

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Primary Citation of related structures