8ZXD image
Deposition Date 2024-06-14
Release Date 2024-11-27
Last Version Date 2025-07-23
Entry Detail
PDB ID:
8ZXD
Title:
the Planar Cell Polarity Core Protein Vangl1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Vang-like protein 1
Gene (Uniprot):VANGL1
Chain IDs:A, B, C, D, E, F
Chain Length:524
Number of Molecules:6
Biological Source:Homo sapiens
Primary Citation
Cryo-EM structure and oligomerization of the human planar cell polarity core protein Vangl1.
Nat Commun 16 135 135 (2025)
PMID: 39753546 DOI: 10.1038/s41467-024-55397-2

Abstact

Vangl is a planar cell polarity (PCP) core protein essential for aligned cell orientation along the epithelial plane perpendicular to the apical-basal direction, which is important for tissue morphogenesis, development and collective cell behavior. Mutations in Vangl are associated with developmental defects, including neural tube defects (NTDs), according to human cohort studies of sporadic and familial cases. The complex mechanisms underlying Vangl-mediated PCP signaling or Vangl-associated human congenital diseases have been hampered by the lack of molecular characterizations of Vangl. Here, we show biochemical and structural evidence that human Vangl1 oligomerizes as dimers of trimers, and that the dimerization of trimers promotes binding to the PCP effector Prickle1 (Pk1) in vitro. Mapping of human disease-associated point mutations suggests potential pathological mechanisms and paves the way for future studies on the importance of lipid binding, central vestibule and oligomerization of Vangl, thereby providing insights into the molecular mechanisms of the PCP signaling pathway.

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Primary Citation of related structures