8ZVX image
Entry Detail
PDB ID:
8ZVX
Keywords:
Title:
Crystal structure of snFPITE-n2
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-06-12
Release Date:
2025-04-02
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.18
R-Value Work:
0.16
R-Value Observed:
0.16
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:snFPITE-n2 A chain
Chain IDs:A
Chain Length:239
Number of Molecules:1
Biological Source:Sipunculus nudus
Polymer Type:polypeptide(L)
Description:snFPITE-n2 B chain
Chain IDs:B
Chain Length:239
Number of Molecules:1
Biological Source:Sipunculus nudus
Primary Citation
A facultative plasminogen-independent thrombolytic enzyme from Sipunculus nudus.
Nat Commun 16 3852 3852 (2025)
PMID: 40274794 DOI: 10.1038/s41467-025-58915-y

Abstact

Current thrombolytic therapies primarily function by converting plasminogen into plasmin, a process dependent on the fibrin-activator complex. This dependence, coupled with the substantial molecular size of plasmin, constrains its effectiveness in degrading D-dimer and restricts its diffusion within thrombi. Here, we introduce a small facultative plasminogen-independent thrombolytic enzyme, snFPITE, isolated from Sipunculus nudus. Compared to traditional thrombolytic agents, snFPITE does not require plasminogen for thrombolysis, although its presence enhances lytic activity. This enzyme fully degrades cross-linked fibrin without leaving residual nondegradable D-dimer and generates a smaller fibrinolytic-active agent from plasminogen. A series of male rats and mice models further confirm that snFPITE is a safety injectable thrombolytic agent. Mechanistically, snFPITE activates plasminogen and degrades fibrin(ogen) in a multisite cleavage manner. snFPITE is inhibited by plasminogen activator inhibitor 1 and α2-antiplasmin via a competitive inhibition. We further identify 28 snFPITE candidate sequences, of which 10 are confirmed as functional genes.

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