8ZSR image
Deposition Date 2024-06-05
Release Date 2025-12-17
Last Version Date 2025-12-17
Entry Detail
PDB ID:
8ZSR
Keywords:
MEMBRANE PROTEIN
Title:
Complex I form respirasome open state bound by proguanil (SC-ProgO)
Biological Source:
Source Organism:
Sus scrofa (Taxon ID: 9823)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZSR validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4L
Gene (Uniprot):MT-ND4L
Chain IDs:A (auth: 4L)
Chain Length:98
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:P56632 Pfam ID:PF00420
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1
Gene (Uniprot):NDUFA1
Chain IDs:B (auth: A1)
Chain Length:70
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:K7GR43 Pfam ID:PF15879
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Gene (Uniprot):NDUFA2
Chain IDs:C (auth: A2)
Chain Length:85
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RGE3 Pfam ID:PF05047
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3
Gene (Uniprot):NDUFA3
Chain IDs:D (auth: A3)
Chain Length:83
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VPG4 Pfam ID:PF14987
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5
Chain IDs:E (auth: A5)
Chain Length:112
Number of Molecules:1
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6
Gene (Uniprot):NDUFA6
Chain IDs:F (auth: A6)
Chain Length:114
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SJP6 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complex I-B14.5a
Gene (Uniprot):NDUFA7
Chain IDs:G (auth: A7)
Chain Length:112
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VLA2 Pfam ID:PF07347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8
Gene (Uniprot):NDUFA8
Chain IDs:H (auth: A8)
Chain Length:171
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SLR1 Pfam ID:PF06747
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial
Gene (Uniprot):NDUFA9
Chain IDs:I (auth: A9)
Chain Length:341
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SL07 Pfam ID:PF01370
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acyl carrier protein
Gene (Uniprot):NDUFAB1
Chain IDs:J (auth: AB), K (auth: AC)
Chain Length:87
Number of Molecules:2
Biological Source:Sus scrofa
UniProt ID:A0A287AAR5 Pfam ID:PF00550
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial
Gene (Uniprot):NDUFA10
Chain IDs:L (auth: AK)
Chain Length:321
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SIS9 Pfam ID:PF01712
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11
Gene (Uniprot):NDUFA11
Chain IDs:M (auth: AL)
Chain Length:140
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LGM4 Pfam ID:PF02466
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
Gene (Uniprot):NDUFA12
Chain IDs:N (auth: AM)
Chain Length:144
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SQP4 Pfam ID:PF05071
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13
Gene (Uniprot):NDUFA13
Chain IDs:O (auth: AN)
Chain Length:142
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1NRT6 Pfam ID:PF06212
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1
Gene (Uniprot):NDUFB1
Chain IDs:P (auth: B1)
Chain Length:56
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D2CGH8 Pfam ID:PF08040
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial
Gene (Uniprot):NDUFB2
Chain IDs:Q (auth: B2)
Chain Length:67
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A5G2QW32 Pfam ID:PF14813
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3
Gene (Uniprot):NDUFB3
Chain IDs:R (auth: B3)
Chain Length:80
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1VD84 Pfam ID:PF08122
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4
Gene (Uniprot):NDUFB4
Chain IDs:S (auth: B4)
Chain Length:128
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1T6M0 Pfam ID:PF07225
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial
Gene (Uniprot):NDUFB5
Chain IDs:T (auth: B5)
Chain Length:138
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SGC6 Pfam ID:PF09781
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6
Gene (Uniprot):NDUFB6
Chain IDs:U (auth: B6)
Chain Length:126
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480KM09 Pfam ID:PF09782
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7
Gene (Uniprot):NDUFB7
Chain IDs:V (auth: B7)
Chain Length:125
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SCH1 Pfam ID:PF05676
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
Gene (Uniprot):NDUFB8
Chain IDs:W (auth: B8)
Chain Length:156
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1RWL7 Pfam ID:PF05821
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9
Gene (Uniprot):NDUFB9
Chain IDs:X (auth: B9)
Chain Length:178
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:K7GSE5 Pfam ID:PF05347
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10
Gene (Uniprot):NDUFB10
Chain IDs:Y (auth: BK)
Chain Length:176
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:I3LDC3 Pfam ID:PF10249
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial
Chain IDs:Z (auth: BL)
Chain Length:102
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1EYI7 Pfam ID:PF10183
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial
Gene (Uniprot):NDUFC1
Chain IDs:AA (auth: CA)
Chain Length:49
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A1XQS6 Pfam ID:PF15088
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] 1 subunit C2
Gene (Uniprot):NDUFC2
Chain IDs:BA (auth: CB)
Chain Length:121
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A480JRW3 Pfam ID:PF06374
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 1
Gene (Uniprot):MT-ND1
Chain IDs:CA (auth: N1)
Chain Length:318
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79874 Pfam ID:PF00146
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 2
Gene (Uniprot):MT-ND2
Chain IDs:DA (auth: N2)
Chain Length:347
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79875 Pfam ID:PF00361, PF06444
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 3
Gene (Uniprot):MT-ND3
Chain IDs:EA (auth: N3)
Chain Length:115
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79880 Pfam ID:PF00507
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 4
Gene (Uniprot):NADH4
Chain IDs:FA (auth: N4)
Chain Length:459
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:Q7IIB7 Pfam ID:PF01059, PF00361
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 5
Gene (Uniprot):NADH5
Chain IDs:GA (auth: N5)
Chain Length:603
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:Q71K68 Pfam ID:PF00662, PF00361, PF06455
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase chain 6
Gene (Uniprot):MT-ND6
Chain IDs:HA (auth: N6)
Chain Length:174
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:O79882 Pfam ID:PF00499
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial
Gene (Uniprot):NDUFS1
Chain IDs:IA (auth: S1)
Chain Length:689
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1V1H9 Pfam ID:PF13510, PF10588, PF22117, PF22151, PF00384, PF09326
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial
Gene (Uniprot):NDUFS2
Chain IDs:JA (auth: S2)
Chain Length:430
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1S1A8 Pfam ID:PF00346
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Complex I-30kD
Gene (Uniprot):NDUFS3
Chain IDs:KA (auth: S3)
Chain Length:208
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A286ZNN4 Pfam ID:PF00329
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
Gene (Uniprot):NDUFS4
Chain IDs:LA (auth: S4)
Chain Length:124
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SN37 Pfam ID:PF04800
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 5
Gene (Uniprot):NDUFS5
Chain IDs:MA (auth: S5)
Chain Length:105
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1SV23 Pfam ID:PF10200
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial
Gene (Uniprot):NDUFS6
Chain IDs:NA (auth: S6)
Chain Length:96
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:F1S031 Pfam ID:PF10276
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial
Gene (Uniprot):NDUFS7
Chain IDs:OA (auth: S7)
Chain Length:156
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A8D1TL60 Pfam ID:PF01058
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial
Gene (Uniprot):NDUFS8
Chain IDs:PA (auth: S8)
Chain Length:176
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A287BDC0 Pfam ID:PF12838
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
Gene (Uniprot):NDUFV1
Chain IDs:QA (auth: V1)
Chain Length:431
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A4X1SZP7 Pfam ID:PF01512, PF22461, PF10589
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial
Gene (Uniprot):NDUFV2
Chain IDs:RA (auth: V2)
Chain Length:217
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A287BG40 Pfam ID:PF01257
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:NADH:ubiquinone oxidoreductase subunit V3
Gene (Uniprot):NDUFV3
Chain IDs:SA (auth: V3)
Chain Length:42
Number of Molecules:1
Biological Source:Sus scrofa
UniProt ID:A0A287BEK4 Pfam ID:PF15880
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
2MR JA ARG modified residue
Ligand Molecules
3PE
ADP
CDL
FES
FMN
MG
NDP
PC1
PEE
PLX
SF4
XEW
ZMP
ZN
Primary Citation
structural basis for inhibition of mammalian respirasome by metformin and proguanil
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZSR
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