8ZQ3 image
Deposition Date 2024-05-31
Release Date 2024-06-26
Last Version Date 2024-06-26
Entry Detail
PDB ID:
8ZQ3
Keywords:
Title:
Structure of ORP1L-RAB7A in the presence of GDP
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.43 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rab-7a
Gene (Uniprot):RAB7A
Mutagens:Q67L
Chain IDs:A
Chain Length:207
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Oxysterol-binding protein-related protein 1
Gene (Uniprot):OSBPL1A
Chain IDs:B
Chain Length:205
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structure of GDP-bound Rab7 Q67L in complex with ORP1L.
Biochem.Biophys.Res.Commun. 725 150232 150232 (2024)
PMID: 38897042 DOI: 10.1016/j.bbrc.2024.150232

Abstact

Molecular processes are orchestrated by various proteins that promote early endosomes to become late endosomes and eventually fuse with lysosomes, guaranteeing the degradation of the content. Rab7, which is localized to late endosomes, is one of the most well-known GTPases. ORP1L is recruited by Rab7 to facilitate the fusion of late endosomes and lysosomes. Here, we present the structure of GDP-bound Rab7 Q67L with ORP1L. Structural analysis, supported by biochemical and ITC binding experiments, not only provides structural insight into the interactions between the ORP1L ANK domain and Rab7 but also suggests that the GTPase activity of Rab7 does not interfere with its ORP1L-binding capacity.

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Chemical

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Primary Citation of related structures
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