8ZPW image
Deposition Date 2024-05-31
Release Date 2024-11-13
Last Version Date 2026-01-14
Entry Detail
PDB ID:
8ZPW
Title:
Cryo-EM structure of the yeast Htm1/Pdi1 complex at a resolution of 3.0 angstrom
Biological Source:
Source Organism(s):
Expression System(s):
Method Details:
Experimental Method:
Resolution:
3.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:ER degradation-enhancing alpha-mannosidase-like protein 1
Gene (Uniprot):MNL1
Chain IDs:A
Chain Length:796
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein disulfide-isomerase
Gene (Uniprot):PDI1
Chain IDs:B
Chain Length:522
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Initiation of ERAD by the bifunctional complex of Mnl1/Htm1 mannosidase and protein disulfide isomerase.
Nat.Struct.Mol.Biol. 32 1006 1018 (2025)
PMID: 39930008 DOI: 10.1038/s41594-025-01491-y

Abstact

Misfolded glycoproteins in the endoplasmic reticulum (ER) lumen are translocated into the cytosol and degraded by the proteasome, a conserved process called ER-associated protein degradation (ERAD). In Saccharomyces cerevisiae, the glycan of these proteins is trimmed by the luminal mannosidase Mnl1 (Htm1) to generate a degradation signal. Interestingly, Mnl1 is associated with protein disulfide isomerase (Pdi1). Here we used cryo-electron microscopy, biochemical and in vivo experiments to elucidate how this complex initiates ERAD. The Mnl1-Pdi1 complex first demannosylates misfolded, globular proteins that are recognized through the C-terminal domain (CTD) of Mnl1; Pdi1 causes the CTD to ignore completely unfolded polypeptides. The disulfides of these globular proteins are then reduced by the Pdi1 component of the complex. Mnl1 blocks the canonical oxidative function of Pdi1, allowing it to function as a disulfide reductase in ERAD. The generated unfolded polypeptides can then be translocated across the membrane into the cytosol.

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