ISDA: 8ZP7

Deposition Date 2024-05-29

Release Date 2024-12-04

Last Version Date 2024-12-04

Entry Detail

PDB ID:

8ZP7

Keywords:

IMMUNE SYSTEM

Title:

Cryo-EM structure of Cas5-HNH Cascade bound with sDNA, Conf1

Biological Source:

Source Organism:

Candidatus Cloacimonetes bacterium ADurb.Bin088 (Taxon ID: 1852835)
Escherichia coli (Taxon ID: 562)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.00 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:RNA (61-MER)
Chain IDs:A
Chain Length:61
Number of Molecules:1
Biological Source:Escherichia coli

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR system Cascade subunit CasD
Gene (Uniprot):casD
Chain IDs:J (auth: B)
Chain Length:388
Number of Molecules:1
Biological Source:Candidatus Cloacimonetes bacterium ADurb.Bin088

UniProt ID:A0A1V6F8C5 Pfam ID:PF09704, PF01844

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR-associated protein Cse1 (CRISPR_cse1)
Gene (Uniprot):BWX75_00747
Chain IDs:B (auth: C)
Chain Length:546
Number of Molecules:1
Biological Source:Candidatus Cloacimonetes bacterium ADurb.Bin088

UniProt ID:A0A1V6F8D1 Pfam ID:PF09481

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR-associated endoribonuclease Cse3
Gene (Uniprot):cse3
Chain IDs:K (auth: D)
Chain Length:272
Number of Molecules:1
Biological Source:Candidatus Cloacimonetes bacterium ADurb.Bin088

UniProt ID:A0A1V6F8C4 Pfam ID:PF08798

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR-associated protein Cse2 (CRISPR_cse2)
Gene (Uniprot):BWX75_00748
Chain IDs:C (auth: E)
Chain Length:174
Number of Molecules:1
Biological Source:Candidatus Cloacimonetes bacterium ADurb.Bin088

UniProt ID:A0A1V6F8C9 Pfam ID:PF09485

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR system Cascade subunit CasC
Gene (Uniprot):casC
Chain IDs:D (auth: F), E (auth: H), F (auth: I), G (auth: J), H (auth: K), I (auth: G)
Chain Length:378
Number of Molecules:6
Biological Source:Candidatus Cloacimonetes bacterium ADurb.Bin088

UniProt ID:A0A1V6F8B5 Pfam ID:PF09344

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (60-MER)
Chain IDs:L (auth: M)
Chain Length:60
Number of Molecules:1
Biological Source:Escherichia coli

Ligand Molecules

Primary Citation

Cryo-EM structure of Cas5-HNH Cascade bound with sDNA, Conf1

Liu, Y.N, Wang, L, Zhang, H, Zhu, H.Show

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