8ZP5 image
Entry Detail
PDB ID:
8ZP5
EMDB ID:
Keywords:
Title:
Cryo-EM structure of origin recognition complex (Orc5 basic patch mutations) with ARS1 DNA bound
Biological Source:
PDB Version:
Deposition Date:
2024-05-29
Release Date:
2025-04-16
Method Details:
Experimental Method:
Resolution:
2.98 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 1
Chain IDs:F (auth: A)
Chain Length:914
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 2
Chain IDs:A (auth: B)
Chain Length:620
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 3
Chain IDs:G (auth: C)
Chain Length:616
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 4
Chain IDs:H (auth: D)
Chain Length:529
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 5
Mutations:R360A, R366A, K367A
Chain IDs:B (auth: E)
Chain Length:479
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Description:Origin recognition complex subunit 6
Chain IDs:C (auth: F)
Chain Length:435
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polydeoxyribonucleotide
Description:DNA (35-MER)
Chain IDs:D (auth: G)
Chain Length:77
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Description:DNA (34-MER)
Chain IDs:E (auth: H)
Chain Length:77
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
DNA bending mediated by ORC is essential for replication licensing in budding yeast.
Proc.Natl.Acad.Sci.USA 122 e2502277122 e2502277122 (2025)
PMID: 40184174 DOI: 10.1073/pnas.2502277122

Abstact

In eukaryotes, the origin recognition complex (ORC) promotes the assembly of minichromosome maintenance 2 to 7 complexes into a head-to-head double hexamer at origin DNA in a process known as replication licensing. In this study, we present a series of cryoelectron microscopy structures of yeast ORC mutants in complex with origin DNA. We show that Orc6, the smallest subunit of ORC, utilizes its transcription factor II B-B domain to orchestrate the sequential binding of ORC to origin DNA. In addition, Orc6 plays the role of a scaffold by stabilizing the basic patch (BP) of Orc5 for ORC to capture and bend origin DNA. Importantly, disrupting DNA bending through mutating three key residues in Orc5-BP impairs ORC's ability to promote replication initiation at two points during the pre-RC assembly process. This study dissects the multifaceted role of Orc6 in orchestrating ORC's activities on DNA and underscores the vital role of DNA bending by ORC in replication licensing.

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