8ZP4 image
Deposition Date 2024-05-29
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
8ZP4
Keywords:
Title:
Cryo-EM structure of origin recognition complex (Orc1 to 5) with ARS1 DNA bound
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.33 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 1
Gene (Uniprot):ORC1
Chain IDs:A
Chain Length:914
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 2
Gene (Uniprot):ORC2
Chain IDs:B
Chain Length:620
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 3
Gene (Uniprot):ORC3
Chain IDs:C
Chain Length:616
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 4
Gene (Uniprot):ORC4
Chain IDs:D
Chain Length:529
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polypeptide(L)
Molecule:Origin recognition complex subunit 5
Gene (Uniprot):ORC5
Chain IDs:G (auth: E)
Chain Length:479
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae S288C
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (31-MER)
Chain IDs:E (auth: G)
Chain Length:77
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (31-MER)
Chain IDs:F (auth: H)
Chain Length:77
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
DNA bending mediated by ORC is essential for replication licensing in budding yeast.
Proc.Natl.Acad.Sci.USA 122 e2502277122 e2502277122 (2025)
PMID: 40184174 DOI: 10.1073/pnas.2502277122

Abstact

In eukaryotes, the origin recognition complex (ORC) promotes the assembly of minichromosome maintenance 2 to 7 complexes into a head-to-head double hexamer at origin DNA in a process known as replication licensing. In this study, we present a series of cryoelectron microscopy structures of yeast ORC mutants in complex with origin DNA. We show that Orc6, the smallest subunit of ORC, utilizes its transcription factor II B-B domain to orchestrate the sequential binding of ORC to origin DNA. In addition, Orc6 plays the role of a scaffold by stabilizing the basic patch (BP) of Orc5 for ORC to capture and bend origin DNA. Importantly, disrupting DNA bending through mutating three key residues in Orc5-BP impairs ORC's ability to promote replication initiation at two points during the pre-RC assembly process. This study dissects the multifaceted role of Orc6 in orchestrating ORC's activities on DNA and underscores the vital role of DNA bending by ORC in replication licensing.

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