ISDA: 8ZOB

Deposition Date 2024-05-28

Release Date 2025-12-10

Last Version Date 2025-12-10

Entry Detail

PDB ID:

8ZOB

Keywords:

PHOTOSYNTHESIS

Title:

Structure of the wild-type PSI-5VCPI supercomplex in Nannochloropsis oceanica

Biological Source:

Source Organism(s):

Nannochloropsis oceanica strain IMET1 (Taxon ID: 1333499)

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.88 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polypeptide(L)
Molecule:VCPI-1
Chain IDs:E (auth: 1)
Chain Length:208
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Polymer Type:polypeptide(L)
Molecule:VCPI-2
Chain IDs:D (auth: 2)
Chain Length:223
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Polymer Type:polypeptide(L)
Molecule:VCPI-3
Chain IDs:C (auth: 3)
Chain Length:220
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Polymer Type:polypeptide(L)
Molecule:VCPI-4
Chain IDs:B (auth: 4)
Chain Length:202
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Polymer Type:polypeptide(L)
Molecule:VCPI-5
Chain IDs:A (auth: 5)
Chain Length:244
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:F (auth: a)
Chain Length:745
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJP7 Pfam ID:PF00223

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:G (auth: b)
Chain Length:737
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RIQ1 Pfam ID:PF00223

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:P (auth: c)
Chain Length:81
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJY1 Pfam ID:PF12838

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:H (auth: d)
Chain Length:136
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RIT2 Pfam ID:PF02531

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:I (auth: e)
Chain Length:67
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJT6 Pfam ID:PF02427

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:J (auth: f)
Chain Length:185
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJ05 Pfam ID:PF02507

Polymer Type:polypeptide(L)
Molecule:PsaS
Chain IDs:O (auth: g)
Chain Length:55
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:K (auth: i)
Chain Length:45
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJ07 Pfam ID:PF00796

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:L (auth: j)
Chain Length:41
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJW8 Pfam ID:PF01701

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:PSI subunit V
Gene (Uniprot):psaL
Chain IDs:M (auth: l)
Chain Length:172
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

UniProt ID:T1RJZ1 Pfam ID:PF02605

Polymer Type:polypeptide(L)
Molecule:PsaM
Chain IDs:N (auth: m)
Chain Length:30
Number of Molecules:1
Biological Source:Nannochloropsis oceanica strain IMET1

Ligand Molecules