8ZLW image
Deposition Date 2024-05-21
Release Date 2025-04-02
Last Version Date 2025-04-09
Entry Detail
PDB ID:
8ZLW
Keywords:
Title:
Crystal Structure of RDGC IQ motif/dCaM Complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.20 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Maltodextrin-binding protein
Gene (Uniprot):malE
Chain IDs:A
Chain Length:376
Number of Molecules:1
Biological Source:Escherichia coli #1/H766
Polymer Type:polypeptide(L)
Molecule:Calmodulin
Gene (Uniprot):Cam
Chain IDs:B (auth: N)
Chain Length:153
Number of Molecules:1
Biological Source:Drosophila melanogaster
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein phosphatase rdgC
Gene (Uniprot):rdgC
Chain IDs:C (auth: R)
Chain Length:33
Number of Molecules:1
Biological Source:Drosophila melanogaster
Ligand Molecules
Primary Citation
Structural insights into the dual Ca 2+ -sensor-mediated activation of the PPEF phosphatase family.
Nat Commun 16 3120 3120 (2025)
PMID: 40169586 DOI: 10.1038/s41467-025-58261-z

Abstact

Serine/threonine-protein phosphatases with EF-hands (PPEFs) are a family of highly conserved proteins implicated in cancer and neuronal degeneration. The initially characterized member, Drosophila melanogaster retinal degeneration C (RDGC) contains a calmodulin (CaM)-interacting extended-IQ motif and a Ca2+-binding EF-like/EF-hand tandem. However, the molecular regulation of PPEF is poorly understood. In this study, we use cryogenic-electron microscopy to delineate the structures of the RDGC/CaM holoenzyme. In the absence of Ca2+, CaM and the EF-like/EF-hand tandem allow the extended-IQ motif to block substrate access to the catalytic sites, constituting an auto-inhibitory mechanism. Upon Ca2+ binding, CaM and the EF-like/EF-hand tandem drive drastic conformational changes in the extended-IQ motif to unlock the catalytic sites. This dual Ca2+-sensor-mediated activation is evolutionarily conserved in mammals. This study provides mechanistic insight into the molecular activation of PPEFs, paving the way for the development of therapeutic strategies for PPEF-related human diseases.

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Primary Citation of related structures