8ZI2 image
Entry Detail
PDB ID:
8ZI2
EMDB ID:
Keywords:
Title:
Cryo-EM reveals transition states of the Acinetobacter baumannii F1-ATPase rotary subunits gamma and epsilon and novel compound targets - Conformation 3
Biological Source:
PDB Version:
Deposition Date:
2024-05-12
Release Date:
2024-11-13
Method Details:
Experimental Method:
Resolution:
2.99 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ATP synthase subunit alpha
Chain IDs:A, B, C
Chain Length:514
Number of Molecules:3
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase subunit beta
Chain IDs:D, E, F
Chain Length:464
Number of Molecules:3
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase epsilon chain
Mutations:deletion 134-139
Chain IDs:G (auth: e)
Chain Length:464
Number of Molecules:1
Biological Source:Acinetobacter baumannii AB5075
Polymer Type:polypeptide(L)
Description:ATP synthase gamma chain
Chain IDs:H (auth: g)
Chain Length:289
Number of Molecules:1
Biological Source:Acinetobacter baumannii AB5075
Primary Citation
Cryo-EM reveals transition states of the Acinetobacter baumannii F 1 -ATPase rotary subunits gamma and epsilon , unveiling novel compound targets.
Faseb J. 38 e70131 e70131 (2024)
PMID: 39467208 DOI: 10.1096/fj.202401629R

Abstact

Priority 1: critical WHO pathogen Acinetobacter baumannii depends on ATP synthesis and ATP:ADP homeostasis and its bifunctional F1FO-ATP synthase. While synthesizing ATP, it regulates ATP cleavage by its inhibitory ε subunit to prevent wasteful ATP consumption. We determined cryo-electron microscopy structures of the ATPase active A. baumannii F1-αßγεΔ134-139 mutant in four distinct conformational states, revealing four transition states and structural transformation of the ε's C-terminal domain, forming the switch of an ATP hydrolysis off- and an ATP synthesis on-state based. These alterations go in concert with altered motions and interactions in the catalytic- and rotary subunits of this engine. These A. baumannii interacting sites provide novel pathogen-specific targets for inhibitors, with the aim of ATP depletion and/or ATP synthesis and growth inhibition. Furthermore, the presented diversity to other bacterial F-ATP synthases extends the view of structural elements regulating such a catalyst.

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