8ZGE image
Entry Detail
PDB ID:
8ZGE
EMDB ID:
Title:
Human lysine O-link glycosylation complex, LH3/ColGalT1 tetramer with bound UDP-galactose
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2024-05-09
Release Date:
2025-03-19
Method Details:
Experimental Method:
Resolution:
3.40 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3
Chain IDs:A, B
Chain Length:778
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Procollagen galactosyltransferase 1
Chain IDs:C (auth: U), D (auth: V)
Chain Length:653
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
The structural basis for the human procollagen lysine hydroxylation and dual-glycosylation.
Nat Commun 16 2436 2436 (2025)
PMID: 40069201 DOI: 10.1038/s41467-025-57768-9

Abstact

The proper assembly and maturation of collagens necessitate the orchestrated hydroxylation and glycosylation of multiple lysyl residues in procollagen chains. Dysfunctions in this multistep modification process can lead to severe collagen-associated diseases. To elucidate the coordination of lysyl processing activities, we determine the cryo-EM structures of the enzyme complex formed by LH3/PLOD3 and GLT25D1/ColGalT1, designated as the KOGG complex. Our structural analysis reveals a tetrameric complex comprising dimeric LH3/PLOD3s and GLT25D1/ColGalT1s, assembled with interactions involving the N-terminal loop of GLT25D1/ColGalT1 bridging another GLT25D1/ColGalT1 and LH3/PLOD3. We further elucidate the spatial configuration of the hydroxylase, galactosyltransferase, and glucosyltransferase sites within the KOGG complex, along with the key residues involved in substrate binding at these enzymatic sites. Intriguingly, we identify a high-order oligomeric pattern characterized by the formation of a fiber-like KOGG polymer assembled through the repetitive incorporation of KOGG tetramers as the biological unit.

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Primary Citation of related structures