8ZEH image
Entry Detail
PDB ID:
8ZEH
EMDB ID:
Keywords:
Title:
PSI-FCPI-L in Thalassiosira pseudonana
Biological Source:
PDB Version:
Deposition Date:
2024-05-06
Release Date:
2024-12-25
Method Details:
Experimental Method:
Resolution:
2.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Tp-Lhcr18
Chain IDs:A
Chain Length:743
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chlorophyll a/c-binding protein Lhcq8
Chain IDs:B
Chain Length:732
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chl a/c light-harvesting protein, major type
Chain IDs:C
Chain Length:80
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Pt17531-like protein
Chain IDs:W (auth: D)
Chain Length:164
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Tp-RedCAP
Chain IDs:D (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Tp-Lhcr20
Chain IDs:E (auth: F)
Chain Length:170
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chl a/c light-harvesting protein, lhcr type
Chain IDs:F (auth: G)
Chain Length:174
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chl a/c light-harvesting protein
Chain IDs:G (auth: H)
Chain Length:168
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chl a/c light-harvesting protein
Chain IDs:H (auth: I)
Chain Length:33
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chl a/c light-harvesting protein
Chain IDs:I (auth: J)
Chain Length:40
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chlorophyll a/c light-harvesting protein
Chain IDs:J (auth: K)
Chain Length:176
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chlorophyll a/c light-harvesting protein
Chain IDs:K (auth: L)
Chain Length:146
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type
Chain IDs:L (auth: M)
Chain Length:29
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A1
Chain IDs:M (auth: a)
Chain Length:743
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I P700 chlorophyll a apoprotein A2
Chain IDs:X (auth: b)
Chain Length:732
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I iron-sulfur center
Chain IDs:Y (auth: c)
Chain Length:80
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit II
Chain IDs:N (auth: d)
Chain Length:164
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IV
Chain IDs:O (auth: e)
Chain Length:185
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit III
Chain IDs:P (auth: f)
Chain Length:170
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit Psa29
Chain IDs:Q (auth: g)
Chain Length:174
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit VIII
Chain IDs:R (auth: i)
Chain Length:33
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit IX
Chain IDs:S (auth: j)
Chain Length:40
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit XI
Chain IDs:T (auth: l)
Chain Length:146
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Photosystem I reaction center subunit XII
Chain IDs:U (auth: m)
Chain Length:29
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Description:Tp-PsaR
Chain IDs:V (auth: r)
Chain Length:89
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Primary Citation
Structures of PSI-FCPI from Thalassiosira pseudonana grown under high light provide evidence for convergent evolution and light-adaptive strategies in diatom FCPIs.
J Integr Plant Biol 67 949 966 (2025)
PMID: 39670505 DOI: 10.1111/jipb.13816

Abstact

Diatoms rely on fucoxanthin chlorophyll a/c-binding proteins (FCPs) for light harvesting and energy quenching under marine environments. Here we report two cryo-electron microscopic structures of photosystem I (PSI) with either 13 or five fucoxanthin chlorophyll a/c-binding protein Is (FCPIs) at 2.78 and 3.20 Å resolutions from Thalassiosira pseudonana grown under high light (HL) conditions. Among them, five FCPIs are stably associated with the PSI core, these include Lhcr3, RedCAP, Lhcq8, Lhcf10, and FCP3. The eight additional Lhcr-type FCPIs are loosely associated with the PSI core and detached under the present purification conditions. The pigments of this centric diatom showed a higher proportion of chlorophylls a, diadinoxanthins, and diatoxanthins; some of the chlorophyll as and diadinoxanthins occupy the locations of fucoxanthins found in the huge PSI-FCPI from another centric diatom Chaetoceros gracilis grown under low-light conditions. These additional chlorophyll as may form more energy transfer pathways and additional diadinoxanthins may form more energy dissipation sites relying on the diadinoxanthin-diatoxanthin cycle. These results reveal the assembly mechanism of FCPIs and corresponding light-adaptive strategies of T. pseudonana PSI-FCPI, as well as the convergent evolution of the diatom PSI-FCPI structures.

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