8ZEH image
Deposition Date 2024-05-06
Release Date 2024-12-25
Last Version Date 2025-04-30
Entry Detail
PDB ID:
8ZEH
Keywords:
Title:
PSI-FCPI-L in Thalassiosira pseudonana
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tp-Lhcr18
Chain IDs:A
Chain Length:743
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c-binding protein Lhcq8
Gene (Uniprot):THAPSDRAFT_23808
Chain IDs:B
Chain Length:732
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chl a/c light-harvesting protein, major type
Gene (Uniprot):Lhcf10
Chain IDs:C
Chain Length:80
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Pt17531-like protein
Gene (Uniprot):FCP3
Chain IDs:W (auth: D)
Chain Length:164
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Tp-RedCAP
Chain IDs:D (auth: E)
Chain Length:185
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Tp-Lhcr20
Chain IDs:E (auth: F)
Chain Length:170
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chl a/c light-harvesting protein, lhcr type
Gene (Uniprot):Lhcr1
Chain IDs:F (auth: G)
Chain Length:174
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chl a/c light-harvesting protein
Gene (Uniprot):Lhcr3
Chain IDs:G (auth: H)
Chain Length:168
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chl a/c light-harvesting protein
Gene (Uniprot):Lhcr4
Chain IDs:H (auth: I)
Chain Length:33
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chl a/c light-harvesting protein
Gene (Uniprot):Lhcr7
Chain IDs:I (auth: J)
Chain Length:40
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c light-harvesting protein
Gene (Uniprot):Lhcr10
Chain IDs:J (auth: K)
Chain Length:176
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c light-harvesting protein
Gene (Uniprot):Lhcr11
Chain IDs:K (auth: L)
Chain Length:146
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Fucoxanthin chlorophyll a/c light-harvesting protein, lhcr type
Gene (Uniprot):Lhcr14
Chain IDs:L (auth: M)
Chain Length:29
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:M (auth: a)
Chain Length:743
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:X (auth: b)
Chain Length:732
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:Y (auth: c)
Chain Length:80
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:N (auth: d)
Chain Length:164
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):PSAE
Chain IDs:O (auth: e)
Chain Length:185
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:P (auth: f)
Chain Length:170
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit Psa29
Gene (Uniprot):THAPSDRAFT_268304
Chain IDs:Q (auth: g)
Chain Length:174
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:R (auth: i)
Chain Length:33
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:S (auth: j)
Chain Length:40
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:T (auth: l)
Chain Length:146
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:U (auth: m)
Chain Length:29
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Polymer Type:polypeptide(L)
Molecule:Tp-PsaR
Gene (Uniprot):THAPSDRAFT_20965
Chain IDs:V (auth: r)
Chain Length:89
Number of Molecules:1
Biological Source:Thalassiosira pseudonana CCMP1335
Primary Citation
Structures of PSI-FCPI from Thalassiosira pseudonana grown under high light provide evidence for convergent evolution and light-adaptive strategies in diatom FCPIs.
J Integr Plant Biol 67 949 966 (2025)
PMID: 39670505 DOI: 10.1111/jipb.13816

Abstact

Diatoms rely on fucoxanthin chlorophyll a/c-binding proteins (FCPs) for light harvesting and energy quenching under marine environments. Here we report two cryo-electron microscopic structures of photosystem I (PSI) with either 13 or five fucoxanthin chlorophyll a/c-binding protein Is (FCPIs) at 2.78 and 3.20 Å resolutions from Thalassiosira pseudonana grown under high light (HL) conditions. Among them, five FCPIs are stably associated with the PSI core, these include Lhcr3, RedCAP, Lhcq8, Lhcf10, and FCP3. The eight additional Lhcr-type FCPIs are loosely associated with the PSI core and detached under the present purification conditions. The pigments of this centric diatom showed a higher proportion of chlorophylls a, diadinoxanthins, and diatoxanthins; some of the chlorophyll as and diadinoxanthins occupy the locations of fucoxanthins found in the huge PSI-FCPI from another centric diatom Chaetoceros gracilis grown under low-light conditions. These additional chlorophyll as may form more energy transfer pathways and additional diadinoxanthins may form more energy dissipation sites relying on the diadinoxanthin-diatoxanthin cycle. These results reveal the assembly mechanism of FCPIs and corresponding light-adaptive strategies of T. pseudonana PSI-FCPI, as well as the convergent evolution of the diatom PSI-FCPI structures.

Legend

Protein

Chemical

Disease

Primary Citation of related structures