8ZEF image
Deposition Date 2024-05-06
Release Date 2025-05-21
Last Version Date 2025-05-21
Entry Detail
PDB ID:
8ZEF
Keywords:
HYDROLASE/DNA
Title:
Crystal structure of Staphylococcus aureus DinG protein in complex with ssDNA and Ca2+
Biological Source:
Source Organism:
Staphylococcus aureus (strain NCTC 8325 / PS 47) (Taxon ID: 93061)
chemical production metagenome (Taxon ID: 2495586)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.21 Å
R-Value Free:
0.29
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
C 2 2 21
8ZEF validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:3'-5' exonuclease DinG
Gene (Uniprot):dinG
Chain IDs:A
Chain Length:897
Number of Molecules:1
Biological Source:Staphylococcus aureus (strain NCTC 8325 / PS 47)
UniProt ID:Q2FYH5 Pfam ID:PF13307, PF00929
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*TP*TP*T)-3')
Chain IDs:B
Chain Length:4
Number of Molecules:1
Biological Source:chemical production metagenome
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*TP*TP*TP*TP*TP*TP*T)-3')
Chain IDs:C
Chain Length:7
Number of Molecules:1
Biological Source:chemical production metagenome
Ligand Molecules
CA
Primary Citation
Structure of Staphylococcus aureus DinG
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZEF