8ZE6 image
Deposition Date 2024-05-04
Release Date 2024-10-30
Last Version Date 2025-05-14
Entry Detail
PDB ID:
8ZE6
Keywords:
Title:
Crystal structure of MjHKU4r-CoV-1 RBD bound to MjDPP4
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.27
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dipeptidyl peptidase 4
Chain IDs:A (auth: B), C (auth: D)
Chain Length:728
Number of Molecules:2
Biological Source:Manis javanica
Polymer Type:polypeptide(L)
Molecule:Spike glycoprotein
Gene (Uniprot):S
Chain IDs:B (auth: C), D (auth: A)
Chain Length:203
Number of Molecules:2
Biological Source:Pangolin coronavirus HKU4
Primary Citation
Structural basis for human DPP4 receptor recognition by a pangolin MERS-like coronavirus.
Plos Pathog. 20 e1012695 e1012695 (2024)
PMID: 39514585 DOI: 10.1371/journal.ppat.1012695

Abstact

Middle East respiratory syndrome coronavirus (MERS-CoV) and the pangolin MERS-like coronavirus MjHKU4r-CoV-1 employ dipeptidyl peptidase 4 (DPP4) as an entry receptor. MjHKU4r-CoV-1 could infect transgenic mice expressing human DPP4. To understand the mechanism of MjHKU4r-CoV-1 entry into cells, we determined the crystal structures of the receptor binding domain (RBD) of MjHKU4r-CoV-1 spike protein bound to human DPP4 (hDPP4) and Malayan pangolin DPP4 (MjDPP4), respectively. The overall hDPP4-binding mode of MjHKU4r-CoV-1 RBD is similar to that of MERS-CoV RBD. MjHKU4r-CoV-1 RBD shows higher binding affinity to hDPP4 compared to the bat MERS-like coronavirus Ty-BatCoV-HKU4. Via swapping residues between MjHKU4r-CoV-1 RBD and Ty-BatCoV-HKU4 RBD, we identified critical determinants on MjHKU4r-CoV-1 that are responsible for virus usage of hDPP4. Our study suggests that MjHKU4r-CoV-1 is more adapted to the human receptor compared to the bat HKU4 coronavirus and highlights the potential of virus emergence into the human population.

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Primary Citation of related structures