ISDA

Deposition Date 2024-05-03

Release Date 2025-02-19

Last Version Date 2025-07-02

Entry Detail

PDB ID:

8ZDR

Keywords:

ANTIVIRAL PROTEIN

Title:

Cryo-EM structure of the Cas9d-sgRNA-target DNA complex

Biological Source:

Source Organism:

metagenome (Taxon ID: 256318)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

2.65 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:RNA (144-MER)
Chain IDs:A
Chain Length:159
Number of Molecules:1
Biological Source:metagenome

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (32-MER)
Chain IDs:B
Chain Length:37
Number of Molecules:1
Biological Source:metagenome

Polymer Type:polypeptide(L)
Molecule:a protein
Chain IDs:C
Chain Length:747
Number of Molecules:1
Biological Source:metagenome

Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*CP*GP*GP*GP*TP*CP*AP*AP*AP*TP*G)-3')
Chain IDs:D
Chain Length:37
Number of Molecules:1
Biological Source:metagenome

Ligand Molecules

Primary Citation

Cryo-EM structure of the Cas9d-sgRNA-target DNA complex

Li, X, Zhang, H, Liu, Z.Show

To Be Published ? ? ? (?)

Primary Citation of related structures