8ZDQ image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDQ
Keywords:
VIRAL PROTEIN
Title:
Cryo-EM structure of Mycobacteriophage Douge complete baseplate (gp13, gp17, gp23, gp16, gp18 and gp20)
Biological Source:
Source Organism:
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.29 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZDQ validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tail Tube Protein (gp13)
Chain IDs:A (auth: M), B (auth: N), C (auth: O), D (auth: P), E (auth: Q), F (auth: R)
Chain Length:300
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Tape Measure Protein (gp16)
Chain IDs:G (auth: S), H (auth: T), I (auth: U)
Chain Length:1699
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Baseplate Upper Protein (gp23)
Chain IDs:J (auth: a), K (auth: b), L (auth: c), M (auth: d), N (auth: e), O (auth: f), P (auth: g), Q (auth: h), R (auth: i), S (auth: j), T (auth: k), U (auth: l)
Chain Length:311
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Distal Tail Protein (gp17)
Chain IDs:V (auth: m), W (auth: n), X (auth: o), Y (auth: p), Z (auth: q), AA (auth: r)
Chain Length:300
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Baseplate Hub Protein (gp18)
Chain IDs:BA (auth: s), CA (auth: t), DA (auth: u)
Chain Length:1699
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Central Fiber Protein (gp20)
Chain IDs:EA (auth: v), FA (auth: w), GA (auth: x)
Chain Length:878
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
NA
Primary Citation
Mycobacteriophage cryo-EM studies reveal the siphophage architecture at the amino acid level and its host interaction for viral genome ejection
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZDQ