8ZDO image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDO
Keywords:
VIRAL PROTEIN
Title:
Cryo-EM structure of Mycobacteriophage Douge baseplate (gp13, gp17, gp23, gp16, gp18 and gp20)
Biological Source:
Source Organism:
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
2.97 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZDO validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tail tube protein (gp13)
Chain IDs:A (auth: G), B (auth: H), C (auth: I), D (auth: J), E (auth: K), F (auth: L), G (auth: M), H (auth: N), I (auth: O), J (auth: P), K (auth: Q), L (auth: R)
Chain Length:300
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Tape measure protein (gp16)
Chain IDs:M (auth: S), N (auth: T), O (auth: U)
Chain Length:587
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Baseplate upper protein (gp23)
Chain IDs:P (auth: a), Q (auth: b), R (auth: c), S (auth: d), T (auth: e), U (auth: f), V (auth: g), W (auth: h), X (auth: i), Y (auth: j), Z (auth: k), AA (auth: l)
Chain Length:311
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Distal tail protein (gp17)
Chain IDs:BA (auth: m), CA (auth: n), DA (auth: o), EA (auth: p), FA (auth: q), GA (auth: r)
Chain Length:295
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Baseplate hub protein (gp18)
Chain IDs:HA (auth: s), IA (auth: t), JA (auth: u)
Chain Length:587
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Central fiber protein (gp20)
Chain IDs:KA (auth: v), LA (auth: w), MA (auth: x)
Chain Length:878
Number of Molecules:3
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
NA
Primary Citation
Mycobacteriophage cryo-EM studies reveal the siphophage architecture at the amino acid level and its host interaction for viral genome ejection
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZDO