8ZDL image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDL
Keywords:
VIRAL PROTEIN
Title:
Cryo-EM structure of Mycobacteriophage Douge genome-free connector (gp5, gp9, gp10, gp12 and gp13)
Biological Source:
Source Organism:
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.78 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZDL validation report
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protal Protein (gp5)
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:545
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Stopper Protein (gp10)
Chain IDs:M, N, O, P, Q, R
Chain Length:112
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Tail Tube Protein (gp13)
Chain IDs:S, T, U, V, W, X
Chain Length:300
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Adaptor Protein (gp9)
Chain IDs:Y (auth: a), Z (auth: b), AA (auth: c), BA (auth: d), CA (auth: e), DA (auth: f), EA (auth: g), FA (auth: h), GA (auth: i), HA (auth: j), IA (auth: k), JA (auth: l)
Chain Length:545
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
Polymer Type:polypeptide(L)
Molecule:Terminator Protein (gp12)
Chain IDs:KA (auth: m), LA (auth: n), MA (auth: o), NA (auth: p), OA (auth: q), PA (auth: r)
Chain Length:112
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
Ligand Molecules
NA
Primary Citation
Mycobacteriophage cryo-EM studies reveal the siphophage architecture at the amino acid level and its host interaction for viral genome ejection
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZDL