8ZDK image
Deposition Date 2024-05-02
Release Date 2025-07-16
Last Version Date 2025-07-16
Entry Detail
PDB ID:
8ZDK
Keywords:
VIRAL PROTEIN
Title:
Cryo-EM structure of Mycobacteriophage Douge genome-packed vertex (gp8 and gp113)
Biological Source:
Source Organism:
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.44 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZDK validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Major Capsid Protein (gp8)
Chain IDs:A (auth: 1), B (auth: 2), C (auth: 3), D (auth: 4), E (auth: 5), F (auth: 6), H (auth: M), I (auth: N), J (auth: O), K (auth: P), L (auth: Q), M (auth: R), O (auth: m), P (auth: n), Q (auth: o), R (auth: p), S (auth: q), T (auth: r), V (auth: T), W (auth: U), X (auth: V), Y (auth: W), Z (auth: X), AA (auth: Y), CA (auth: t), DA (auth: u), EA (auth: v), FA (auth: w), GA (auth: x), HA (auth: y)
Chain Length:382
Number of Molecules:30
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A345MBE3 Pfam ID:PF11651
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid Cement Protein (gp113)
Chain IDs:G (auth: 7), N (auth: S), U (auth: s), BA (auth: Z), IA (auth: z)
Chain Length:49
Number of Molecules:5
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A345MBP4
Ligand Molecules
NA
Primary Citation
Mycobacteriophage cryo-EM studies reveal the siphophage architecture at the amino acid level and its host interaction for viral genome ejection
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZDK
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