8ZDJ image
Deposition Date 2024-05-02
Release Date 2025-06-25
Last Version Date 2025-06-25
Entry Detail
PDB ID:
8ZDJ
Keywords:
VIRAL PROTEIN
Title:
Cryo-EM structure of Mycobacteriophage Douge genome-packed connector (gp5, gp9, gp10, gp12 and gp13)
Biological Source:
Source Organism:
Mycolicibacterium smegmatis MC2 155 (Taxon ID: 246196)
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
3.74 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
8ZDJ validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Portal Protein (gp5)
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:137
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A345MBE0 Pfam ID:PF05133
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Stopper Protein (gp10)
Chain IDs:M, N, O, P, Q, R
Chain Length:165
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A345MBE5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tail Tube Protein (gp13)
Chain IDs:S, T, U, V, W, X
Chain Length:299
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A5J6TI27 Pfam ID:PF02368
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Adaptor Protein (gp9)
Chain IDs:Y (auth: a), Z (auth: b), AA (auth: c), BA (auth: d), CA (auth: e), DA (auth: f), EA (auth: g), FA (auth: h), GA (auth: i), HA (auth: j), IA (auth: k), JA (auth: l)
Chain Length:137
Number of Molecules:12
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A5J6TNE5
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Terminator Protein (gp12)
Chain IDs:KA (auth: m), LA (auth: n), MA (auth: o), NA (auth: p), OA (auth: q), PA (auth: r)
Chain Length:165
Number of Molecules:6
Biological Source:Mycolicibacterium smegmatis MC2 155
UniProt ID:A0A5J6THQ9
Ligand Molecules
NA
Primary Citation
Mycobacteriophage cryo-EM studies reveal the siphophage architecture at the amino acid level and its host interaction for viral genome ejection
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZDJ