8ZDE image
Deposition Date 2024-05-02
Release Date 2025-11-05
Last Version Date 2025-11-05
Entry Detail
PDB ID:
8ZDE
Keywords:
TRANSCRIPTION
Title:
Crystal structure of HsmR with DNA bound
Biological Source:
Source Organism:
Clostridioides difficile (Taxon ID: 1496)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
2.91 Å
R-Value Free:
0.27
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
8ZDE validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MarR-family transcriptional regulator
Gene (Uniprot):CDR20291_0782
Chain IDs:A, B, C, D, E, F
Chain Length:167
Number of Molecules:6
Biological Source:Clostridioides difficile
UniProt ID:A0A9R0BIW1 Pfam ID:PF01047
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*TP*TP*AP*GP*TP*TP*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*CP*CP*AP*TP*T)-3')
Chain IDs:G, I, K
Chain Length:22
Number of Molecules:3
Biological Source:Clostridioides difficile
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*AP*AP*TP*GP*GP*TP*TP*TP*GP*CP*AP*TP*AP*CP*AP*AP*AP*CP*TP*AP*AP*T)-3')
Chain IDs:H, J, L
Chain Length:22
Number of Molecules:3
Biological Source:Clostridioides difficile
Ligand Molecules
K
Primary Citation
Crystal structure of C. difficile HsmR with DNA bound
To Be Published ? ? ? (?)
Primary Citation of related structures
8ZA5