ISDA: 8ZDA

Deposition Date 2024-05-01

Release Date 2025-11-05

Last Version Date 2025-11-05

Entry Detail

PDB ID:

8ZDA

Keywords:

DNA BINDING PROTEIN

Title:

Cryo-EM structure of eSaCas9_NNG-guide RNA-target DNA complex in a catalytically active state

Biological Source:

Source Organism:

Staphylococcus aureus (Taxon ID: 1280)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

ELECTRON MICROSCOPY

Resolution:

3.14 Å

Aggregation State:

PARTICLE

Reconstruction Method:

SINGLE PARTICLE

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Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:CRISPR-associated endonuclease Cas9
Gene (Uniprot):cas9
Chain IDs:A
Chain Length:1056
Number of Molecules:1
Biological Source:Staphylococcus aureus

UniProt ID:J7RUA5 Pfam ID:PF13395, PF22702, PF18061, PF18070, PF21574

Polymer Type:polyribonucleotide
Molecule:sgRNA
Chain IDs:B
Chain Length:99
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polydeoxyribonucleotide
Molecule:Target DNA strand1
Chain IDs:C
Chain Length:17
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polydeoxyribonucleotide
Molecule:Non-target DNA strand
Chain IDs:D
Chain Length:43
Number of Molecules:1
Biological Source:Staphylococcus aureus

Polymer Type:polydeoxyribonucleotide
Molecule:Target DNA strand2
Chain IDs:E
Chain Length:26
Number of Molecules:1
Biological Source:Staphylococcus aureus

Ligand Molecules

Primary Citation

Molecular engineering and structural mechanism of the compact CRISPR-Cas9 nuclease

Omura, S.N, Nakagawa, R, Kajimoto, S, Okazaki, S, Ishiguro, S, Mori, H, Kashiwakura, Y, Hiramoto, T, Hirano, H, Yamashita, K, Jividen, K, Tsai, S.Q, Yachie, N, Ohmori, T, Nishimasu, H, Nureki, O.Show

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Primary Citation of related structures

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