8Z83 image
Deposition Date 2024-04-21
Release Date 2025-01-29
Last Version Date 2025-01-29
Entry Detail
PDB ID:
8Z83
Keywords:
Title:
Photosynthetic LH1-RC complex from the purple bacterium Halorhodospira halophila
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Hhal_1410
Chain IDs:E (auth: A), I (auth: F), M (auth: K), Q, U, Y, CA (auth: 3), GA (auth: 7)
Chain Length:64
Number of Molecules:8
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Hhal_1411
Chain IDs:F (auth: B), J (auth: G), N, R, V, Z, DA (auth: 4), HA (auth: 8)
Chain Length:75
Number of Molecules:8
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center cytochrome c subunit
Chain IDs:A (auth: C)
Chain Length:362
Number of Molecules:1
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Hhal_1606
Chain IDs:G (auth: D), K (auth: I), O, S, W, AA (auth: 1), EA (auth: 5), IA (auth: 9)
Chain Length:67
Number of Molecules:8
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Antenna complex, alpha/beta subunit
Gene (Uniprot):Hhal_1607
Chain IDs:H (auth: E), L (auth: J), P, T, X, BA (auth: 2), FA (auth: 6), JA (auth: 0)
Chain Length:74
Number of Molecules:8
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Photosynthetic reaction center H subunit
Chain IDs:D (auth: H)
Chain Length:278
Number of Molecules:1
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Reaction center protein L chain
Chain IDs:B (auth: L)
Chain Length:276
Number of Molecules:1
Biological Source:Halorhodospira halophila
Polymer Type:polypeptide(L)
Molecule:Reaction center protein M chain
Chain IDs:C (auth: M)
Chain Length:323
Number of Molecules:1
Biological Source:Halorhodospira halophila
Primary Citation
A Native LH1-RC-HiPIP Supercomplex from an Extremophilic Phototroph.
Commun Biol 8 42 42 (2025)
PMID: 39799244 DOI: 10.1038/s42003-024-07421-w

Abstact

Halorhodospira (Hlr.) halophila strain BN9622 is an extremely halophilic and alkaliphilic purple phototrophic bacterium and has been widely used as a model for exploring the osmoadaptive and photosynthetic strategies employed by phototrophic extreme halophiles that enable them to thrive in hypersaline environments. Here we present the cryo-EM structures of (1) a unique native Hlr. halophila triple-complex formed from light-harvesting (LH1), the reaction center (RC), and high-potential iron-sulfur protein (HiPIP) at 2.44 Å resolution, and (2) a HiPIP-free LH1-RC complex at 2.64 Å resolution. Differing from the LH1 in the Hlr. halophila LH1-LH2 co-complex where LH1 encircles LH2, the RC-associated LH1 complex consists of 16 (rather than 18) αβ-subunits circularly surrounding the RC. These distinct forms of LH1 indicate that the number of subunits in a Hlr. halophila LH1 complex is flexible and its size is a function of the photocomplex it encircles. Like LH1 in the LH1-LH2 co-complex, the RC-associated LH1 complex also contained two forms of αβ-polypeptides and both dimeric and monomeric molecules of bacteriochlorophyll a. The majority of the isolated Hlr. halophila LH1-RC complexes contained the electron donor HiPIP bound to the surface of the RC cytochrome subunit near the heme-1 group. The bound HiPIP consisted of an N-terminal functional domain and a long C-terminal extension firmly attached to the cytochrome subunit. Despite overall highly negative surface-charge distributions for both the cytochrome subunit and HiPIP, the interface between the two proteins was relatively uncharged and neutral, forming a pathway for electron tunneling. The structure of the Hlr. halophila LH1-RC-HiPIP complex provides insights into the mechanism of light energy acquisition coupled with a long-distance electron donating process toward the charge separation site in a multi-extremophilic phototroph.

Legend

Protein

Chemical

Disease

Primary Citation of related structures