8Z39 image
Deposition Date 2024-04-14
Release Date 2025-04-16
Last Version Date 2025-04-16
Entry Detail
PDB ID:
8Z39
Keywords:
IMMUNE SYSTEM
Title:
Crystal structure of Sonic hedgehog in complex with antibody 5E1 mutant L-T56A with metals
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
1.80 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
C 1 2 1
8Z39 validation report
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Sonic hedgehog protein N-product
Gene (Uniprot):SHH
Chain IDs:A
Chain Length:169
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q15465 Pfam ID:PF01085
Polymer Type:polypeptide(L)
Molecule:Heavy chain of antibody 5E1
Chain IDs:B (auth: H)
Chain Length:241
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Light chain of antibody 5E1
Mutagens:T56A
Chain IDs:C (auth: L)
Chain Length:236
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
CA
CL
SO4
ZN
Primary Citation
Biophysical insights to improve affinity of antibodies to fluctuated epitope of antigen: A case of anti-Shh antibody 5E1 against Shh antigen.
To Be Published ? ? ? (?)
Primary Citation of related structures
8Z39