8Z11 image
Deposition Date 2024-04-10
Release Date 2025-01-22
Last Version Date 2025-01-22
Entry Detail
PDB ID:
8Z11
Keywords:
Title:
Cryo-EM structure of haptophyte photosystem I
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.74 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:iFCPI-7
Chain IDs:A
Chain Length:752
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-1
Chain IDs:B
Chain Length:734
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-11
Chain IDs:C
Chain Length:205
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-6
Chain IDs:D
Chain Length:142
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-5
Chain IDs:E
Chain Length:206
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-8
Chain IDs:F
Chain Length:240
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-13
Chain IDs:G
Chain Length:198
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-10
Chain IDs:H
Chain Length:198
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-3
Chain IDs:I
Chain Length:194
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-9
Chain IDs:J
Chain Length:40
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-4
Chain IDs:K
Chain Length:92
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-12
Chain IDs:L
Chain Length:145
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-15/14/16
Chain IDs:M, P, W
Chain Length:30
Number of Molecules:3
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-17
Chain IDs:N
Chain Length:224
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-20/19/21
Chain IDs:O, R, T
Chain Length:206
Number of Molecules:3
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-18
Chain IDs:Q
Chain Length:187
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-22
Chain IDs:S
Chain Length:235
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:iFCPI-2
Chain IDs:U
Chain Length:203
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:L-iFP
Chain IDs:V
Chain Length:122
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA
Chain IDs:X (auth: a)
Chain Length:752
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB
Chain IDs:Y (auth: b)
Chain Length:734
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:Z (auth: c)
Chain Length:205
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:AA (auth: d)
Chain Length:142
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:PsaE
Chain IDs:BA (auth: e)
Chain Length:206
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit III
Gene (Uniprot):psaF
Chain IDs:CA (auth: f)
Chain Length:240
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI
Chain IDs:DA (auth: i)
Chain Length:194
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IX
Gene (Uniprot):psaJ
Chain IDs:EA (auth: j)
Chain Length:40
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:PsaK
Chain IDs:FA (auth: k)
Chain Length:92
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL
Chain IDs:GA (auth: l)
Chain Length:145
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Gene (Uniprot):psaM
Chain IDs:HA (auth: m)
Chain Length:30
Number of Molecules:1
Biological Source:Isochrysis galbana
Polymer Type:polypeptide(L)
Molecule:PsaR
Chain IDs:IA (auth: r)
Chain Length:206
Number of Molecules:1
Biological Source:Isochrysis galbana
Primary Citation
Structural insights into the assembly and energy transfer of haptophyte photosystem I-light-harvesting supercomplex.
Proc.Natl.Acad.Sci.USA 121 e2413678121 e2413678121 (2024)
PMID: 39642204 DOI: 10.1073/pnas.2413678121

Abstact

Haptophyta represents a major taxonomic group, with plastids derived from the primary plastids of red algae. Here, we elucidated the cryoelectron microscopy structure of the photosystem I-light-harvesting complex I (PSI-LHCI) supercomplex from the haptophyte Isochrysis galbana. The PSI core comprises 12 subunits, which have evolved differently from red algae and cryptophytes by losing the PsaO subunit while incorporating the PsaK subunit, which is absent in diatoms and dinoflagellates. The PSI core is encircled by 22 fucoxanthin-chlorophyll a/c-binding light-harvesting antenna proteins (iFCPIs) that form a trilayered antenna arrangement. Moreover, a pigment-binding subunit, LiFP, which has not been identified in any other previously characterized PSI-LHCI supercomplexes, was determined in I. galbana PSI-iFCPI, presumably facilitating the interactions and energy transfer between peripheral iFCPIs and the PSI core. Calculation of excitation energy transfer rates by computational simulations revealed that the intricate pigment network formed within PSI-iFCPI ensures efficient transfer of excitation energy. Overall, our study provides a solid structural foundation for understanding the light-harvesting and energy transfer mechanisms in haptophyte PSI-iFCPI and provides insights into the evolution and structural variations of red-lineage PSI-LHCIs.

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