8Z02 image
Entry Detail
PDB ID:
8Z02
Keywords:
Title:
CoA bound to human GTP-specific succinyl-CoA synthetase
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2024-04-08
Release Date:
2024-12-11
Method Details:
Experimental Method:
Resolution:
2.32 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial
Chain IDs:A
Chain Length:321
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial
Chain IDs:B
Chain Length:395
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Nuclear GTPSCS functions as a lactyl-CoA synthetase to promote histone lactylation and gliomagenesis.
Cell Metab. 37 377 ? (2025)
PMID: 39642882 DOI: 10.1016/j.cmet.2024.11.005

Abstact

Histone lysine lactylation is a physiologically and pathologically relevant epigenetic pathway that can be stimulated by the Warburg effect-associated L-lactate. Nevertheless, the mechanism by which cells use L-lactate to generate lactyl-coenzyme A (CoA) and how this process is regulated remains unknown. Here, we report the identification of guanosine triphosphate (GTP)-specific SCS (GTPSCS) as a lactyl-CoA synthetase in the nucleus. The mechanism was elucidated through the crystallographic structure of GTPSCS in complex with L-lactate, followed by mutagenesis experiments. GTPSCS translocates into the nucleus and interacts with p300 to elevate histone lactylation but not succinylation. This process depends on a nuclear localization signal in the GTPSCS G1 subunit and acetylation at G2 subunit residue K73, which mediates the interaction with p300. GTPSCS/p300 collaboration synergistically regulates histone H3K18la and GDF15 expression, promoting glioma proliferation and radioresistance. GTPSCS represents the inaugural enzyme to catalyze lactyl-CoA synthesis for epigenetic histone lactylation and regulate oncogenic gene expression in glioma.

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